Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_L15
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 186 3e-48
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc... 61 2e-10
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 29 1.1
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 28 1.4
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 27 2.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 4.4
SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy... 26 5.8
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 26 5.8
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 186 bits (453), Expect = 3e-48
Identities = 95/221 (42%), Positives = 133/221 (60%)
Frame = +3
Query: 90 NYNPPQPSITQRQRSDLFGKNILTVDTFNKETLNDTFNLAQFMKTSVNKGRYLDDILRGK 269
N+ P + S + K+I++V + L+ F +A M+ V + +D + GK
Sbjct: 1918 NFKPSHELVQLINSSPFYRKHIISVHQVTRSDLHVLFAIAHQMRIIVERQGVID-LCYGK 1976
Query: 270 VMASIFYEVSTRTSCSFAAAMHRLGGSVVHTDATSSSAKKGESLEDSVAIMASYSDVVVL 449
++ ++F+E STRTS SF AAM RLGG VV A++SS KGESL D++ + Y D +VL
Sbjct: 1977 LLCTMFFEPSTRTSSSFDAAMQRLGGKVVAVTASASSVNKGESLADTIRTLGCYGDAIVL 2036
Query: 450 RHPEPGAVSRASKLSRKPVINAGDGVGEHPTQALLDVFTIREEIGTVNGLTITMVGDLKN 629
RHP + A+ S P+IN G+G EHPTQA LD++TIREE+G+VNGLTIT +GDLK
Sbjct: 2037 RHPSIESARIAANFSPVPIINGGNGSKEHPTQAFLDLYTIREELGSVNGLTITFIGDLKY 2096
Query: 630 GRTVHSLARXXXXXXXXXXXXSPPGLXMPKHITDYVASKGI 752
GRTVHSLAR SP L +P + D + + G+
Sbjct: 2097 GRTVHSLARLLAFWHVELHLVSPEQLALPDDVKDDIRANGL 2137
>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
Arg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 60.9 bits (141), Expect = 2e-10
Identities = 42/124 (33%), Positives = 63/124 (50%)
Frame = +3
Query: 258 LRGKVMASIFYEVSTRTSCSFAAAMHRLGGSVVHTDATSSSAKKGESLEDSVAIMASYSD 437
L + +A IF + STRT S +A+ LGG+ + ESL D+ +++S
Sbjct: 50 LSSQNVAMIFSKRSTRTRVSVESAVSCLGGNAMFLGKDDIQLGVNESLYDTSKVISSMVS 109
Query: 438 VVVLRHPEPGAVSRASKLSRKPVINAGDGVGEHPTQALLDVFTIREEIGTVNGLTITMVG 617
+V R + V+ +K + PVIN G HP QAL D+ TI+E + +GL + VG
Sbjct: 110 GIVARVNKYSDVATLAKHASCPVIN-GLCDTFHPLQALADLLTIKETFKSFDGLKVAWVG 168
Query: 618 DLKN 629
D N
Sbjct: 169 DANN 172
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 294 VSTRTSCSFAAAMHRLGGSVVHTDATSSSAKKGESLEDSVAIMASYSDVVVLRHPEPGAV 473
V +S SF + LG S+ + SSA L+ + A+ + S VL H + ++
Sbjct: 458 VKPASSSSFGRSHSHLGTSLRSNELNGSSASSSIFLQSNNAVNPNVSPSTVLEHAKHPSL 517
Query: 474 SRASKLS 494
++ S +S
Sbjct: 518 AKHSGVS 524
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 96 NPPQPSITQRQRSDLFGKNILTVDT-FNKETLNDTFNLAQFMKTSVNKG 239
NP PS+T RQ +D G+N T ++T N A M + G
Sbjct: 372 NPADPSLTLRQTTDFSGQNAENGSTNLPQKTSNSDMPTANSMPVKLENG 420
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 87 SNYNPPQPSITQRQRSDLFGKNILTVDTFNKETLNDTFNLAQFMKTSVNKGRYLDDILRG 266
S NP +P +TQ+QR +++ K +L N+ +N ++M V G+ D +
Sbjct: 325 SAVNPQRPYLTQKQRRNIY-KALLEK---NENKVNSVVGSPEYMAPEVVYGKKYDRTVDY 380
Query: 267 KVMASIFYE 293
+ I YE
Sbjct: 381 WSLGCICYE 389
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 640 TVRPFLRSPTIVIVRPFTVPISSRIVKTSNNACVGCS 530
++R FLR+ I+ F PIS V+T+ CV S
Sbjct: 3438 SMRIFLRNKCEPIISSFGFPISKSAVRTNIERCVQTS 3474
>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 228
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 559 FLRYEKKSVQ*MASRSQWLAILKMDAQFIPLL 654
F EK+ + + S WL + MDAQF+P L
Sbjct: 15 FANLEKEVGRMLKYGSDWLHVDVMDAQFVPNL 46
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 25 YAKRIPXFHHKQLLDKDVIAHRITIHHSLQLHNDNAVICS 144
YAK P FH Q L + +A+ + S L ND++ I S
Sbjct: 571 YAKSPPSFHATQDLLRKTLAYTNSSGTSTVLSNDSSAISS 610
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,620
Number of Sequences: 5004
Number of extensions: 61837
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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