Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_L13
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 1.0
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694... 30 2.4
03_04_0006 + 16257288-16259522 30 2.4
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.4
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.1
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 29 4.1
12_02_0077 - 13288916-13289659,13289689-13289691 28 9.5
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 9.5
06_01_1012 + 7926408-7927232 28 9.5
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 9.5
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 9.5
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 331 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 477
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>08_02_0600 -
19166283-19166851,19166988-19168839,19169347-19169415,
19171797-19171844,19173500-19173622
Length = 886
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 50 PGPAFSGLPRIFLAV-RSCRFRFVRDRHDSVRPPFNG 157
P P ++GLPR F R C+ +D H V PP G
Sbjct: 222 PPPPYTGLPRAFFGQHRGCKVTLYQDAH--VAPPLAG 256
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -1
Query: 538 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 386
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 355 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 254
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 538 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 413
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>04_04_1105 - 30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -2
Query: 135 ESC-RSRTKRNRHDLTA--RKIRGRPENAGPGSSP 40
ESC R + ++ D+TA K RGR N PG+SP
Sbjct: 906 ESCSRDKARKRSDDVTAMGEKRRGRMHNHEPGASP 940
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 481 ESSSTGSSFPADSPKPVPLAVVSLDSR 401
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 136 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 264
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>06_01_1012 + 7926408-7927232
Length = 274
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = -2
Query: 189 GFPLSVPVLS*PLNGGRTESCRSRTKRNRHDLTARKIRGRPENAGPGSSPKRK 31
G + VPV GG + +S +R H T + A P SP +K
Sbjct: 171 GVSVPVPVSIAAAAGGECDDAKSEHRRRHHHKTTSAAKNANPAAAPPRSPAKK 223
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 136 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 264
CT++ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -1
Query: 511 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 404
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,377,957
Number of Sequences: 37544
Number of extensions: 451441
Number of successful extensions: 1407
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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