Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_L10
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0907 - 22490158-22490555,22490647-22491250                       30   2.6  
01_05_0606 - 23607170-23607568,23607738-23607941,23608035-236081...    29   3.5  
01_06_1313 - 36212524-36213669                                         29   4.6  
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366...    28   8.1  
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312...    28   8.1  

>07_03_0907 - 22490158-22490555,22490647-22491250
          Length = 333

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 163 PARARYNEDMQTWQ---GRTETGSEGGEPLPP 249
           P  AR+ +   TW+   GR ++GS GGE  PP
Sbjct: 231 PPLARHLKKSDTWETRPGRRQSGSGGGEDAPP 262


>01_05_0606 -
           23607170-23607568,23607738-23607941,23608035-23608113,
           23608371-23608430,23608514-23608611,23608703-23608891,
           23610670-23611368
          Length = 575

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 220 GSEGGEPLPPANIPIDAVWQPVAGTR 297
           G  G EP PP   P +++W P+   R
Sbjct: 106 GDNGDEPRPPTVAPAESLWAPIGWRR 131


>01_06_1313 - 36212524-36213669
          Length = 381

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -3

Query: 551 MDPPTVSCGFTPESFSKHRTYVALYFKFQFSLIALTRALSVSV 423
           M PPT S      SF  HR+ V  +F     L+A   AL V V
Sbjct: 233 MAPPTFSTEEEKSSFEIHRSGVVTFFAVFSMLVATAMALLVKV 275


>09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,
            3667017-3667242,3667328-3667846,3668789-3668863,
            3668963-3669052,3669142-3669222,3672176-3672222,
            3672620-3672685,3673834-3673930,3673983-3674046,
            3674160-3674278,3674448-3674563,3676675-3676708
          Length = 936

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 433  LKARVKA-IRENWNLKYSATYVLCLLKDSGVKPQETVGGSISVIASASPNRPXTNLLTIL 609
            LKA+  + + ++ ++    T  L  +KD+  KP +T        A   PN P  ++L  +
Sbjct: 835  LKAKSSSGLHDDDDIDVLITSTLVGIKDNLAKPIQTA-------APQDPNAPLWDMLKKI 887

Query: 610  DTEPQTGIEETLHICVKPF 666
              EP+  +   LH+C   F
Sbjct: 888  ALEPEDKMRVGLHLCKPEF 906


>08_02_0911 +
           22530370-22530497,22531083-22531126,22531224-22531267,
           22531428-22531946,22532032-22532257,22532336-22532662,
           22532915-22533165,22533374-22534072
          Length = 745

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 433 LKARVKA-IRENWNLKYSATYVLCLLKDSGVKPQETVGGSISVIASASPNRPXTNLLTIL 609
           LKA+  + + ++ ++    T  L  +KD+  KP +T        A   PN P  ++L  +
Sbjct: 644 LKAKSSSGLHDDDDIDVLITSTLVGIKDNLAKPIQTA-------APQDPNAPLWDMLKKI 696

Query: 610 DTEPQTGIEETLHICVKPF 666
             EP+  +   LH+C   F
Sbjct: 697 ALEPEDKMRVGLHLCKPEF 715


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,118,402
Number of Sequences: 37544
Number of extensions: 529207
Number of successful extensions: 1691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)