Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_L10
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068708-1|AAC17759.1|  452|Caenorhabditis elegans Hypothetical ...    39   0.004
AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical ...    32   0.44 
AL022288-9|CAK55188.1|  452|Caenorhabditis elegans Hypothetical ...    31   0.77 
AL022288-8|CAA18367.2|  402|Caenorhabditis elegans Hypothetical ...    31   0.77 
Z83125-10|CAB05625.1|  459|Caenorhabditis elegans Hypothetical p...    31   1.3  
U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in ge...    31   1.3  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    31   1.3  
AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical ...    30   1.8  
U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL033512-3|CAA22077.1|  243|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>AF068708-1|AAC17759.1|  452|Caenorhabditis elegans Hypothetical
           protein C18G1.7 protein.
          Length = 452

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 726 GGSHFYMYNESRTPRVGCXLXYYRKXGLFTLLPW 827
           G SHF +Y  S T  V   L +Y+K G+ T++PW
Sbjct: 180 GASHFIVYFHSSTKEVKMVLDHYQKLGILTIMPW 213


>AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical
           protein F39G3.2 protein.
          Length = 467

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 717 RLLGGSHFYMYNESRTPRVGCXLXYYRKXGLFTLLPW 827
           R  G + F +Y  S T +V   L YYR  G+  L PW
Sbjct: 192 RSQGVTRFIVYYHSSTTQVRNLLEYYRNLGILRLRPW 228


>AL022288-9|CAK55188.1|  452|Caenorhabditis elegans Hypothetical
           protein ZK1025.4b protein.
          Length = 452

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 717 RLLGGSHFYMYNESRTPRVGCXLXYYRKXGLFTLLPW 827
           R  G + F +Y  S T      L YY K GL  L PW
Sbjct: 177 RAQGATRFIVYFHSATQDTKKVLDYYEKLGLIELRPW 213


>AL022288-8|CAA18367.2|  402|Caenorhabditis elegans Hypothetical
           protein ZK1025.4a protein.
          Length = 402

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 717 RLLGGSHFYMYNESRTPRVGCXLXYYRKXGLFTLLPW 827
           R  G + F +Y  S T      L YY K GL  L PW
Sbjct: 177 RAQGATRFIVYFHSATQDTKKVLDYYEKLGLIELRPW 213


>Z83125-10|CAB05625.1|  459|Caenorhabditis elegans Hypothetical
           protein T15D6.12 protein.
          Length = 459

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 717 RLLGGSHFYMYNESRTPRVGCXLXYYRKXGLFTLLPW 827
           R  G S F +Y  S T      L YYR  G+  + PW
Sbjct: 185 RAHGASRFIVYYHSATKDTWKVLEYYRDMGIIEIRPW 221


>U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform b protein.
          Length = 603

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 333 SDGSRGANNRSDKNARSRPRHLPLVAPRQPHADAQGPRQGYKRKLEF 473
           SDGS G  +RS   A SR +H  +   +Q    + GP + + R   F
Sbjct: 460 SDGSNGRRHRSSSIASSRSKHSYMSKGKQFSESSGGPSRSHTRVSSF 506


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 333 SDGSRGANNRSDKNARSRPRHLPLVAPRQPHADAQGPRQGYKRKLEF 473
           SDGS G  +RS   A SR +H  +   +Q    + GP + + R   F
Sbjct: 460 SDGSNGRRHRSSSIASSRSKHSYMSKGKQFSESSGGPSRSHTRVSSF 506


>AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical
           protein ZK1025.7 protein.
          Length = 461

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 717 RLLGGSHFYMYNESRTPRVGCXLXYYRKXGLFTLLPW 827
           R  G + F ++  S T      L YY K GL  L PW
Sbjct: 182 RAQGATRFIVFYHSSTEDTKKVLDYYEKLGLIELRPW 218


>U64608-2|AAB04591.1|  537|Caenorhabditis elegans Hypothetical
           protein T22B7.4 protein.
          Length = 537

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +3

Query: 360 RSDKNARSRPRHLPLVAPR-QPHADAQGPRQGYKRKLEFKIQCNVRSVFAERFRC---EA 527
           R  K    +P  + ++  R  PH   +  RQ  KR+++ K +  V S  +E+ +C   +A
Sbjct: 361 RRKKKLNEKPNKIKIIRARVPPHKKIRSTRQFGKRRVKRKPKVPVGSSNSEQAKCKLEKA 420

Query: 528 TRDSRRIHISHRKCFTKSTXD*P 596
             + ++  +S    F  +  + P
Sbjct: 421 NSEEKKTEVSSEDVFLDANEEFP 443


>AL033512-3|CAA22077.1|  243|Caenorhabditis elegans Hypothetical
           protein Y49A3A.4 protein.
          Length = 243

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 444 RQGYKRKLEFKIQCNVRSVFA---ERFRCEATRDSRRIHISHRK 566
           R+ YKR +   +QC     F    + +  E T DSR IHISH K
Sbjct: 97  RKFYKRMMS--LQCAKTCKFCVDDDEYEEEETEDSREIHISHLK 138


>Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical
           protein E03H4.5 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 717 RLLGGSHFYMYNESRTPRVGCXLXYYRKXGLFTLLPW 827
           R  G S F ++  S T      L YYR  G+  + PW
Sbjct: 185 RAHGTSRFIVFFHSATKDTWKVLEYYRNLGIIEIRPW 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,759,718
Number of Sequences: 27780
Number of extensions: 430643
Number of successful extensions: 1331
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)