Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_L08
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 32 0.64
02_04_0238 + 21186072-21186883,21187315-21189346 31 1.5
11_06_0610 - 25449085-25453284 30 2.6
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.4
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 29 6.0
04_01_0041 - 464695-464850,467485-469029 29 6.0
01_05_0227 - 19512866-19514983 29 6.0
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 28 7.9
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 7.9
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.9 bits (69), Expect = 0.64
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 161 EEEKALTKEGMAEAAETXKGTISSMNRSSRNPVAK 57
E+++ LTK G + +ET KG++ S++RS A+
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRSESRVKAR 185
>02_04_0238 + 21186072-21186883,21187315-21189346
Length = 947
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 702 GIDGNGC*VWGWLVYGIGGFDDRVDVAEIAGEGGLMHKGETANSN 568
GIDG + WL G+ G + ++ V I G GGL G+T +N
Sbjct: 169 GIDGPKIELIRWLTEGVSGPEQQLKVVPIVGSGGL---GKTTLAN 210
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = +3
Query: 579 RSRPYASSHPPL-RSRLHQPDHQIPRFHTPTXPXLNIHFHQSPEXRTKKEFAPGVKASVG 755
+S P A PP S+ P P HTP+ P +SP K +P G
Sbjct: 609 KSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPPPPTPEG 668
Query: 756 H 758
H
Sbjct: 669 H 669
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +3
Query: 588 PYASSHPPLRSRLHQPDHQIPRFHTPTXPXLNIHFHQSPEXRTKKEFAPGVKASVGH 758
P S P S+ P P HTP+ P +SP + +P A GH
Sbjct: 646 PSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSPPPPAPEGH 702
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 352 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 525
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 526 VEGVNVLATPSSSRITIGGLALMHQ 600
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 28.7 bits (61), Expect = 6.0
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Frame = -2
Query: 693 GNGC*VWGW---LVYGIGGFDDRVDVAEIAGEGGLMH---KGETANSNARG*RGGQHIDS 532
G GC WGW L G G VD+ A +GG + G S G DS
Sbjct: 173 GRGCGRWGWDSPLFVGGGARGVGVDLGLQARDGGTPNDGGHGAARGSERCGPPSASDQDS 232
Query: 531 FNCDVSSSPTKVNCDWYFEARGGRK 457
V + V D +ARGGR+
Sbjct: 233 VPF-VGTGARGVGVDLELQARGGRR 256
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 313 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 489
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 490 TVD 498
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 530 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 438
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 585 RPYASSHPPLRSRLHQPDHQIPRFHTP 665
RP+ H P H P H PR H P
Sbjct: 407 RPWCRPHTPRPRSPHSPTHPRPRLHHP 433
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 304 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 483
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 484 PVTVDLCWTTADVTVEGVNVLATPSS 561
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,530,368
Number of Sequences: 37544
Number of extensions: 470657
Number of successful extensions: 1252
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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