Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_L05
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 29 0.59
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.2
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 26 7.3
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 7.3
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 26 7.3
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 25 9.6
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 9.6
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 9.6
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 29.5 bits (63), Expect = 0.59
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 296 PLPEPLSHGGSRGLKSSMKQRLLPTRVVDGGVIGEERQ 183
P P+S G SRG SS++Q++ + ++ G + E Q
Sbjct: 576 PTTRPVSRGLSRGTSSSLQQKVKASTPLNSGALNETVQ 613
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 285 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 401
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 376 PSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPPS 543
P+ ++ TPPPP + S TS P S + +++ T+ TVPP+
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 362
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 515 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 411
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 40 TVRSDIESRERVPGPXHVTAGVPQGSALSPXTIQFVYQ 153
T+ SD ESR R + G+ G+ + P I YQ
Sbjct: 399 TILSDPESRRRFDSGVDLEPGMEGGAGMDPFDILRAYQ 436
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 321 STAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 422
ST +L K+ RP PLP + P+ VRP
Sbjct: 382 STGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 38 EPFVPISSRGNAFPAPXTSQPE 103
+PF PIS + A+ P T PE
Sbjct: 116 DPFAPISVKSGAWKKPYTKVPE 137
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 290 PEPLSHGGSRGLKSSMKQRLLPTRVVDG 207
P P H G R R LPT V+DG
Sbjct: 311 PSPTRHVGCRTFFMVTVSRFLPTCVIDG 338
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 653 YTCIGHDGAYASFVECHLISKGHFTSP 573
Y +G DG Y S EC S+ FT P
Sbjct: 156 YETLGEDGIYTSLDECK--SRAIFTDP 180
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 333 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIP---WAPKVKYLGVTLDSRMTF 503
L ++ RP +L+ V+ AP++R ++ P W PK K G R
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466
Query: 504 RPHIKTVRDR 533
R H + V D+
Sbjct: 467 RKHARNVVDQ 476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,998
Number of Sequences: 5004
Number of extensions: 67428
Number of successful extensions: 223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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