Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_L04
         (1016 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 413 PPPPPXKXLFXPPPPP 460
           PPPPP      PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 413 PPPPPXKXLFXPPPPP 460
           P PPP   +  PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPP 765



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 411 PPPPPXKXFCXXPPPP 458
           PPPPP       PPPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
 Frame = +3

Query: 411 PPPPPXKXF-----CXXPPPPXXLKKKK 479
           PPPPP   F        PPPP  +KK+K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = +2

Query: 413 PPPPPXKXLFXPP--PPP 460
           PPPPP    F PP  PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPP 26



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 413 PPPPPXKXLFXPPPPP 460
           PPPP  +    PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPP 28



 Score = 22.6 bits (46), Expect(2) = 8.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 609 PPPPPPXXGXKK 574
           PPPPPP    KK
Sbjct: 24  PPPPPPPGYVKK 35



 Score = 21.4 bits (43), Expect(2) = 8.0
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -3

Query: 672 PXPDPPXXXGXXGGXXXXXXXPPPPP 595
           P  +PP      G        PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,856
Number of Sequences: 5004
Number of extensions: 15434
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)