Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_L03
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    29   0.79 
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    28   1.8  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   2.4  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   3.2  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    27   4.2  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   4.2  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   7.4  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   7.4  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   7.4  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    26   7.4  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.7  

>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 21  VGNVIDQLKYRYDKELYNAERPALRKILEKDD 116
           +G+VID+LK   D  +  +  P LR +LEK +
Sbjct: 380 IGSVIDELKKNTDNIIRKSFLPVLRTLLEKSN 411


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 352 QGDTPSQFNSSAPQVITLVPITILPLRTI 266
           QG TP Q + +A Q ++   +T+ PL+TI
Sbjct: 550 QGATPGQISFAAFQGVSFNNVTVTPLKTI 578


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/85 (23%), Positives = 33/85 (38%)
 Frame = +3

Query: 156 FVDGVEVKSVPKTNNIELLVSDGWYSVKATTDGLLARMVRSGKIVIGTKVMTCGAELLNC 335
           F DG +  +    N ++   S GW      TD L+A  ++        K++    ++   
Sbjct: 73  FQDGAKKNNESFENPVDASFSGGWCKAAEITDSLVADAIQHAPSAHLPKILKL-CDIWEK 131

Query: 336 EGVSPWEDVSSVRLKLSGNSTSRCP 410
               P E + S+R KL     S  P
Sbjct: 132 ASTFPPEKLESLRSKLKDAMASTEP 156


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
 Frame = -3

Query: 340 PSQFNSSAPQVITLVPIT--ILPLRTIRARSPSVVAFTEYQPSLTNSSMLFVFGTLFTST 167
           PS  +SSA    T    +  ++   T+ + SPS V+ T   PS++++    V  + FTS 
Sbjct: 110 PSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSL 169

Query: 166 P----STKIPATHSTKVL 125
                ST + +T++T  L
Sbjct: 170 SSSGFSTVLSSTNTTSAL 187


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
 Frame = +3

Query: 54  YDKELYNAERPALRKILEKDDVPSKTLVLCVAGIFVDGVE--VKS----VPKTNNIE-LL 212
           ++ E+  AER ++ ++LE   + +  +VLC+A + +D     VK+      K++ +E LL
Sbjct: 792 FENEI-EAERESMHQMLETFRIKADVVVLCLAAMNLDAYRYIVKNEHVRPSKSSELENLL 850

Query: 213 VSDGWY 230
             D W+
Sbjct: 851 KDDSWW 856


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -3

Query: 361 TSSQGDTPSQFNSSAPQVITLVPITILPLRTIRARSPSVVAFTEYQPSLTNSSMLFV 191
           +SS+G   S F   + +++T      L   TIR  SPS  AF+     +  S++LF+
Sbjct: 10  SSSKGLRSSIFFQGSSRILTF----FLNQLTIRLTSPSAYAFSSIHFEILQSTILFL 62


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 21  VGNVIDQLKYRYDKELYNAERPALRKILEKDDVPSKTLVLCVAGIFVDGVEVKSVPKTNN 200
           V   +DQ  +RY + + ++       I + ++VP K  +L V+        VKS+P T  
Sbjct: 234 VSQFLDQRGFRYGEVIMDSVESCQNAIEKLNNVPYKGSILEVSIKNKASSSVKSIPTTPT 293

Query: 201 IELL 212
            E L
Sbjct: 294 GESL 297


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = +3

Query: 168 VEVKSVPKTNNIELLVSDGWYSVKATTDGLLARMVRSGKIVIGTKVMTCGAEL 326
           + +  + KT     L+   WY+ +   +    R  R G+++ G     CG  L
Sbjct: 295 MRLSEIGKTETASPLLQYEWYTNETEAEAKARRDKRLGELLTGKHCSECGTPL 347


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -3

Query: 382 SFRRT-EDTSSQGDTPSQFNSSAPQVITLVPITILPLRTIRARSPSVVAFTEY--QPSLT 212
           SFR++  D S+ G   ++ N S       +PI++LP     A +P+  +      Q  L 
Sbjct: 317 SFRQSLPDISAFGIPKTETNPSEVVAPGTIPISVLPTSNFSAATPANPSLINQNGQEFLQ 376

Query: 211 NSSMLFVF 188
            S +L++F
Sbjct: 377 QSRVLYLF 384


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 190 FGTLFTSTPSTKIPATHSTK 131
           FG+LFTST S   PA  ST+
Sbjct: 642 FGSLFTSTNSETEPAEESTE 661


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = -2

Query: 563 HGGAVSQFLDVQRRVDPGHVDPEARHPPALRVHLPQSAGRANAVMPQPRVPGTATGRVPG 384
           H  A ++   V R+      +P     PA      + A R +     P  PGT +  VPG
Sbjct: 474 HDKASAEKHKVARKPSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPG 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,543
Number of Sequences: 5004
Number of extensions: 54533
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)