Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_L03
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334... 104 1e-22
01_01_0983 + 7775045-7776328 32 0.47
01_01_0982 + 7770960-7771800,7771829-7772113,7773194-7773282 32 0.47
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658... 30 1.9
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 30 1.9
12_02_0090 + 13493311-13494180 30 2.5
05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507 30 2.5
05_01_0184 - 1298640-1298751,1298936-1299027,1299695-1299910,130... 30 2.5
05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107 30 2.5
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 29 3.3
03_01_0303 + 2369607-2371958 29 4.4
09_01_0038 - 639995-640318 29 5.8
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961... 28 7.7
>01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,
3345039-3345101,3345582-3345769,3345846-3346029,
3346535-3346606,3346676-3346787,3346878-3346953,
3347050-3347100,3347179-3347260,3347331-3347567,
3347650-3347772,3348141-3348326,3348680-3349625,
3350426-3350551,3350683-3350811,3350918-3351049,
3351167-3351301,3351450-3351575,3352080-3352148,
3352149-3352205,3352302-3352436,3352600-3352704,
3352841-3352906,3353333-3353503,3353806-3353983
Length = 1395
Score = 104 bits (249), Expect = 1e-22
Identities = 75/212 (35%), Positives = 106/212 (50%), Gaps = 24/212 (11%)
Frame = +3
Query: 21 VGNVIDQLKYRYDKELYNAERPALRKILEKDDVPSKTLVLCVAGIFV------------- 161
VGNV+++LKYRYD+E+ N R A++KILE + PS +VLC++ I+
Sbjct: 885 VGNVLEELKYRYDREVNNGHRSAIKKILEGNASPSLMMVLCISAIYSCPDLNNSKPEDDR 944
Query: 162 -----DGVEVKSV-PKTNNI--ELLVSDGWYSVKATTDGLLARMVRSGKIVIGTKVMTCG 317
D E KS+ P N+ ++ ++DGWYS+ A+ D L + K+ IG K+ G
Sbjct: 945 AHTDDDNSENKSLRPAKRNMSTKIELTDGWYSLDASLDLALLEQLEKRKLFIGQKLRIWG 1004
Query: 318 AELLNCEG-VSPWEDVSSVRLKLSGNSTSRCPWYARLG--HHRVRPSRALRQVDAQGGXX 488
A L G VS E +V+L + N T R W LG H P A + + A GG
Sbjct: 1005 ASLCGWAGPVSFHEASGTVKLMIHINGTYRARWDETLGLCKHAGVP-LAFKCIKASGGRV 1063
Query: 489 XXXXXXXXXXYPPLYVEKLGDGTTVTRSERLE 584
YP +Y E+ DG V RSER+E
Sbjct: 1064 PRTLVGVTRIYPVMYRERFSDGRFVVRSERME 1095
>01_01_0983 + 7775045-7776328
Length = 427
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = -2
Query: 539 LDVQRRVDPGHVDPEARHPPALRVHLPQSAGRANAVMPQPRVP 411
L V RRV P VDP AR + L SAG V P P P
Sbjct: 43 LSVSRRVSPAEVDPCARCKSPFVLALDPSAGLVLLVAPPPPSP 85
>01_01_0982 + 7770960-7771800,7771829-7772113,7773194-7773282
Length = 404
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = -2
Query: 539 LDVQRRVDPGHVDPEARHPPALRVHLPQSAGRANAVMPQPRVP 411
L V RRV P VDP AR + L SAG V P P P
Sbjct: 41 LSVSRRVSPAEVDPCARCKSPFVLALDPSAGLVLLVAPPPPSP 83
>11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,
6581525-6582125,6583981-6585054,6585745-6585873,
6585925-6585963
Length = 1471
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -3
Query: 448 DGRTR*CPSRAYQGQRLVE--FPDSFRRTEDTSSQGDTPSQFNSSAPQVITLVPITILPL 275
+ R + C + A + ++ F D F + DT S+ D PS F Q T + I L
Sbjct: 973 NARVKTCRTNAVMREFMLHRSFCDHFIGSLDTMSESDDPSTFRHLFIQNCTNINILRLAK 1032
Query: 274 RTIRARSPSV 245
+ +RARS ++
Sbjct: 1033 KKLRARSLTI 1042
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +3
Query: 132 LVLCVAGIFVDGVEVKSVPKTNNIELLVSDGWYSVKATTDGLLARMVRSGKIVIGTKVMT 311
L+ C AG+ VD + + +V + + + DGW + T + + + IV +V
Sbjct: 78 LLACAAGLMVDPLFLYAVSLSGPLMCVFLDGWLAAAVTALRCMVDAMHAWNIVTQLRVSR 137
Query: 312 CGAE 323
G E
Sbjct: 138 AGRE 141
>12_02_0090 + 13493311-13494180
Length = 289
Score = 29.9 bits (64), Expect = 2.5
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = -3
Query: 406 QRLVEFPDSFRRTEDTSSQGDTPSQFNSSAPQVIT-LVPITILPLRTIRARSPSVVAFTE 230
Q P + RR + + ++AP + T LVP T + A SP+ V
Sbjct: 67 QAATPIPATTRRPSAVVATSTPTAPSQTTAPSLATILVPATTSAPKPATASSPTKV---- 122
Query: 229 YQPSLTNSSMLFVFGTLFTSTPSTKIPATHSTKVLEGTSSFS 104
P+L+ + +L + G +T S+ T ST VL S+ S
Sbjct: 123 --PALSVNPILSIIGVPSPTTTSSLATTTTSTAVLFPRSTLS 162
>05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507
Length = 353
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 357 PPKATP-PRSSTAQPHRSSLWFRSRFYRSAPSGP 259
P ++P PRS+ A RS W RSR SAP P
Sbjct: 83 PVASSPSPRSAAAAASRSPSWDRSRGRASAPGSP 116
>05_01_0184 -
1298640-1298751,1298936-1299027,1299695-1299910,
1300045-1300614
Length = 329
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/73 (27%), Positives = 28/73 (38%)
Frame = -2
Query: 527 RRVDPGHVDPEARHPPALRVHLPQSAGRANAVMPQPRVPGTATGRVPGQL*TY*RYVLPR 348
+ + P P A PP HL Q A R A P RV + G L ++ P
Sbjct: 124 QHLPPAKPSPLAGSPPGAATHLQQPAARMLASSPAKRVLSVFSPSAAGSLRRERNHLPPL 183
Query: 347 RHPLAVQQLSPTG 309
+++L TG
Sbjct: 184 ASCFCLRRLMSTG 196
>05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107
Length = 662
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/73 (27%), Positives = 28/73 (38%)
Frame = -2
Query: 527 RRVDPGHVDPEARHPPALRVHLPQSAGRANAVMPQPRVPGTATGRVPGQL*TY*RYVLPR 348
+ + P P A PP HL Q A R A P RV + G L ++ P
Sbjct: 124 QHLPPAKPSPLAGSPPGAATHLQQPAARMLASSPAKRVLSVFSPSAAGSLRRERNHLPPL 183
Query: 347 RHPLAVQQLSPTG 309
+++L TG
Sbjct: 184 ASCFCLRRLMSTG 196
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 287 RDRNQSDDLWG*AVELRGGVALGGRIFSTSKAVRELDQSLSLVRAAGASPR 439
RDR +D LWG V + G LG + A +E + L+ R++GA PR
Sbjct: 138 RDRCSADTLWGRHVNRKWGRVLG------AAARKEWEAELAARRSSGALPR 182
>03_01_0303 + 2369607-2371958
Length = 783
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 265 RARSPSVVAFTEYQPSLTNSSML 197
RAR+P+V F+ PSLTN S+L
Sbjct: 500 RARAPAVALFSARGPSLTNPSVL 522
>09_01_0038 - 639995-640318
Length = 107
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 282 YRSAPSGPGARQWWPSPNTNRHSL 211
Y SAPSG R WW T+ SL
Sbjct: 4 YSSAPSGGHRRDWWRQVGTDGRSL 27
>03_02_0581 -
9617039-9617936,9618057-9618502,9618985-9619071,
9619276-9619416,9620220-9620411,9620491-9620652,
9621116-9621199,9621329-9621706
Length = 795
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 99 ILEKDDVPSKTLVLCVAGIFVDGVE 173
I++ + VP K + C AGIF G+E
Sbjct: 179 IIKGEKVPPKLIYPCAAGIFAHGIE 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,910,053
Number of Sequences: 37544
Number of extensions: 443706
Number of successful extensions: 1539
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -