Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_K23
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   309   4e-85
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   308   5e-85
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   2.5  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   4.3  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   5.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   5.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   7.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.9  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   9.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  309 bits (758), Expect = 4e-85
 Identities = 144/246 (58%), Positives = 184/246 (74%), Gaps = 1/246 (0%)
 Frame = +3

Query: 45  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 224
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 225 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 404
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 405 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 584
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 585 NGGTIEDKVKWAREHLEKPIPVDSVFGQDEMIDCIGVTRAKDTK-VSLLVGXKXXTRKXT 761
           NGG++ DKV+WAREH EK + + S F Q+EMID IGVTR K  +  +   G K   RK  
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243

Query: 762 XVLXKL 779
             L K+
Sbjct: 244 RGLRKV 249


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  308 bits (757), Expect = 5e-85
 Identities = 143/246 (58%), Positives = 184/246 (74%), Gaps = 1/246 (0%)
 Frame = +3

Query: 45  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 224
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 225 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 404
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 405 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 584
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 585 NGGTIEDKVKWAREHLEKPIPVDSVFGQDEMIDCIGVTRAKDTK-VSLLVGXKXXTRKXT 761
           NGG++ DKV+WAREH EK + + S F Q+EMID IGVTR K  +  +   G K   RK  
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243

Query: 762 XVLXKL 779
             L K+
Sbjct: 244 RGLRKV 249


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 206 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIF 39
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P   V  IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 33  RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 152
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +3

Query: 24  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYKAGMTHVV 200
           P C      H  + S   +P     +  G  K FP D+P S P+  +   G     T  +
Sbjct: 291 PGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTVAL 350

Query: 201 REPDRPGSKI 230
           + P++   +I
Sbjct: 351 KVPEKSNKEI 360


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 498 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 608
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 304 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 456
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 715 FVSFALVTPMQSIISSWPNTESTGIGFSRCSLAHFTLSSMVPPLSW 578
           F+ F +V    S   SW  T  +  G  +   AH ++S +  P  W
Sbjct: 746 FIYFCVVYTGGSSNFSWWGTTVSSAGCDKKGCAHLSVSDISKPSGW 791


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 461  FASKLILPFLTGFSESLLLAFVPVFVEATST 369
            F SKL L  +  F E + LAF+  F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 570 MEIQLNGGTIEDKVKWAREH 629
           M +Q  G TI    KW REH
Sbjct: 46  MPVQYKGQTISASHKWTREH 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,107
Number of Sequences: 5004
Number of extensions: 71600
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)