Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_K17
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   2.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   2.6  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    27   3.5  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    26   6.0  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    25   8.0  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 214  SCYVCGDASHVASGCSMRFNFCSL 143
            +CY CG A H    C +R  F  L
Sbjct: 1805 TCYKCGKADHNLRECKLRIRFQGL 1828


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 214  SCYVCGDASHVASGCSMRFNFCSL 143
            +CY CG A H    C +R  F  L
Sbjct: 1805 TCYKCGKADHNLRECKLRIRFQGL 1828


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 281 IEKSLKTSXCRKTXRAXXPGFSRKKWGPSPGKKXFQKR 394
           +  S K +  RK  R     F R+KWG    +K + +R
Sbjct: 1   MSSSFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQR 38


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 217 VSCYVCGDASHVASGCSM 164
           ++CY CG   H A  C+M
Sbjct: 116 MNCYACGSYGHQARDCTM 133


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 218 LQARAREPTG*XXLFKVXAGNIEKSLKTSXCRKTXRAXXPGFS 346
           +QA  R  T    LF +  G ++K L+   CR+  +   PG +
Sbjct: 179 IQAHKRPET--QNLFCIIQGGLDKRLREICCREMVKRNTPGIA 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,633
Number of Sequences: 5004
Number of extensions: 26230
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)