Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_K13
(953 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 36 0.006
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.24
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.73
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.97
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 28 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.9
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 9.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 9.0
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 36.3 bits (80), Expect = 0.006
Identities = 25/67 (37%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = +2
Query: 320 GXLGGXXXXXGGPXPXPXXXP--XGXGGGGXXRRGXGGPRXXXRCGXGAPXXXXGPXGPG 493
G GG GGP P P G GG G G GG G G GP G G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG------FGGGPGGFEGGPGGFG 241
Query: 494 XTPGGXG 514
PGG G
Sbjct: 242 GGPGGFG 248
Score = 32.3 bits (70), Expect = 0.10
Identities = 24/73 (32%), Positives = 24/73 (32%)
Frame = +2
Query: 296 GGPDSPRPGXLGGXXXXXGGPXPXPXXXPXGXGGGGXXRRGXGGPRXXXRCGXGAPXXXX 475
GGP P PG GG G G G GG G G G
Sbjct: 198 GGPP-PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGG 256
Query: 476 GPXGPGXTPGGXG 514
GP G G PGG G
Sbjct: 257 GPGGFGGGPGGHG 269
Score = 25.8 bits (54), Expect = 9.0
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = +2
Query: 296 GGPDSPR--PGXLGGXXXXXGGPXPXPXXXPXGXGGGGXXRRGXGGP 430
GGP PG GG GG P G GGG G GGP
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG---GHGGP 271
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.24
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = -3
Query: 492 PGPXGPXXXXGAPXPHRXXXRGPPXPRRXXPPPPXPXGXXXGXGWGPPXXXXXPPKXPGR 313
P P P P P PP P PPPP P G GPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPPPPGVAGA--GPPPPPPPPPAVSAG 788
Query: 312 G 310
G
Sbjct: 789 G 789
Score = 29.9 bits (64), Expect = 0.55
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -2
Query: 451 PTPXXXXGXPPTPAXXPPPPXPXGXTXGGGXGPPXXVGXXPQXPRP 314
P P PTPA P P P GG PP G P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Frame = -3
Query: 426 PPXPRRXXPPP---PXPXGXXXGXGWGPPXXXXXPPKXPGRGESGPP 295
PP P P P P P GPP PP PG +GPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPP----PPPPPGVAGAGPP 776
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.73
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = -2
Query: 457 AXPTPXXXXGXPPTPAXXPPPPXPXGXTXGGGXGP-PXXVGXXPQXPRP 314
A P P G PP P PP P T G P P P P P
Sbjct: 1197 APPVPKPSVGVPPVPPPSTAPPVP---TPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Frame = -2
Query: 457 AXPTPXXXXGXPPTPAXXPPPPXPXGXTXGGGXGPPXXV-GXXPQXPRPXGVXAP 296
A P P PP PA PP P PP V P P+P V AP
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSV----AAPPVPVPSGAPPVPKP-SVAAP 1150
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.97
Identities = 22/103 (21%), Positives = 28/103 (27%), Gaps = 2/103 (1%)
Frame = -3
Query: 513 PXPPGVXPGPXGPXXXX--GAPXPHRXXXRGPPXPRRXXPPPPXPXGXXXGXGWGPPXXX 340
P PP + P G P P P PP P P
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310
Query: 339 XXPPKXPGRGESGPPXXXXXIXSXTXVPGLNPEFWSRGGRLPI 211
PP P R G P + + P P + G +P+
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL 353
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 402 PPPPXPXGXXXGXGWGPPXXXXXPPKXPGR 313
PPPP P G PP PP P R
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/72 (23%), Positives = 19/72 (26%)
Frame = -3
Query: 513 PXPPGVXPGPXGPXXXXGAPXPHRXXXRGPPXPRRXXPPPPXPXGXXXGXGWGPPXXXXX 334
P PP + P P PP P PP P G P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPL--PPAAPA 475
Query: 333 PPKXPGRGESGP 298
PP P + P
Sbjct: 476 PPPAPAPAPAAP 487
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 209 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 111
Y ES + D+ + SH+ A +I Q R+G R
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/50 (30%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Frame = -2
Query: 457 AXPTPXXXXGXPPTPAXXPPPPXPXGXTXG--GGXGPPXXVGXXPQXPRP 314
A P PP P PPPP G PP P P P
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 91 MSTTYIILLPFLLTCAIASAAECENATSLS 180
+S TYIILLPF C A +++ +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.8 bits (54), Expect = 9.0
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = -2
Query: 430 GXPPTPAXXPPPPXPXGXTXGGGXGPPXXVGXXPQXPRPXGVXA 299
G PPT P P G + GP V P +P + A
Sbjct: 961 GLPPTSKSKPFPRLATGGSTAAARGPRPVVQNKPAATKPVSMPA 1004
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,950
Number of Sequences: 5004
Number of extensions: 38979
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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