Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_K13
         (953 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.082
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.76 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   1.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.082
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -3

Query: 462 GAPXPHRXXXRGPPXPRRXXPPPPXPXGXXXGXGWGPP 349
           GAP P     + P  P+R  PP P       G    PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 13/45 (28%), Positives = 14/45 (31%)
 Frame = -2

Query: 430 GXPPTPAXXPPPPXPXGXTXGGGXGPPXXVGXXPQXPRPXGVXAP 296
           G  P  A  P PP P      G    P   G  P  P    +  P
Sbjct: 407 GQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 424 PPTPAXXPPPPXPXG 380
           PP PA  PPPP   G
Sbjct: 338 PPKPAPPPPPPSSSG 352


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 103 YIILLPFLLTCAIAS-AAECENATSLSLMIDSLLAT 207
           Y ILL  L+TC I S +  C   T  S + D ++AT
Sbjct: 3   YSILLSLLITCLICSPSVHC--GTRPSFVSDEMIAT 36


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 393  GGGGXXAGVGG 425
            GGGG  AG+GG
Sbjct: 1705 GGGGSLAGLGG 1715


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 393  GGGGXXAGVGG 425
            GGGG  AG+GG
Sbjct: 1701 GGGGSLAGLGG 1711


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 236 GVGGGDSRSYV 204
           G GGG +RSYV
Sbjct: 599 GAGGGGARSYV 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,658
Number of Sequences: 438
Number of extensions: 6092
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)