Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_K09
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   186   3e-48
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   185   6e-48
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   7.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.9  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   9.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.9  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  186 bits (453), Expect = 3e-48
 Identities = 89/145 (61%), Positives = 100/145 (68%)
 Frame = +2

Query: 125 SMYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 304
           S+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9   SIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 305 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 484
           GTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSA 127

Query: 485 XXXXXXXXXXQARGHIIEKIPELPL 559
                      ARGH IE+IPE+PL
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPL 152



 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 42/82 (51%), Positives = 60/82 (73%)
 Frame = +3

Query: 534 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 713
           ++  P  P VV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQ 203

Query: 714 RKGPLIIFNKDQGLTRAXRXXP 779
           R+GPL++FN+D G+ +A R  P
Sbjct: 204 RRGPLVVFNEDAGIVKAFRNIP 225


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  185 bits (451), Expect = 6e-48
 Identities = 88/145 (60%), Positives = 100/145 (68%)
 Frame = +2

Query: 125 SMYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 304
           S+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9   SIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 305 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 484
           GTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASA 127

Query: 485 XXXXXXXXXXQARGHIIEKIPELPL 559
                      ARGH IE+IPE+PL
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPL 152



 Score =   99 bits (238), Expect = 4e-22
 Identities = 42/82 (51%), Positives = 60/82 (73%)
 Frame = +3

Query: 534 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 713
           ++  P  P VV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQ 203

Query: 714 RKGPLIIFNKDQGLTRAXRXXP 779
           R+GPL++FN+D G+ +A R  P
Sbjct: 204 RRGPLVVFNEDTGIVKAFRNIP 225


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 118 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 41
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 534  LKRFPSFPWVVAD 572
            L ++P FPWV+AD
Sbjct: 1947 LTQYPVFPWVIAD 1959


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = -3

Query: 571 SATTQGKLGNLFNNVSSSLNE 509
           SAT+  +L ++F+N+SSS+++
Sbjct: 670 SATSNSQLSSIFSNLSSSISD 690


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 527 HIIEKIPELPLGCSRQSPRDQQDQTGCH 610
           H++EK+ E+ + C R       ++  CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,636
Number of Sequences: 5004
Number of extensions: 57253
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)