Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_K09
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 171 4e-43
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 169 2e-42
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.16
05_04_0292 + 19893895-19894983 31 1.1
03_05_0366 - 23505755-23506441 31 1.1
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.6
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.6
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 5.9
04_01_0588 + 7657510-7657992,7658397-7658843 29 5.9
02_04_0457 + 23093020-23093343,23093798-23093806 29 5.9
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 28 7.8
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 171 bits (417), Expect = 4e-43
Identities = 81/137 (59%), Positives = 92/137 (67%)
Frame = +2
Query: 149 TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVAR 328
T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+R
Sbjct: 20 TDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSR 79
Query: 329 IPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXX 508
IPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 80 IPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPS 139
Query: 509 XXQARGHIIEKIPELPL 559
ARGH IE +PELPL
Sbjct: 140 LVLARGHRIETVPELPL 156
Score = 71.3 bits (167), Expect = 9e-13
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +3
Query: 534 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 713
++ P P V++D + I KT QA+ L+++ A++D K S +R GKGKMRNRR I
Sbjct: 148 IETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYIN 207
Query: 714 RKGPLIIFNKD-QGLTRAXRXXP 779
RKGPLI++ + + +A R P
Sbjct: 208 RKGPLIVYGTEGSKIVKAFRNLP 230
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 169 bits (411), Expect = 2e-42
Identities = 81/141 (57%), Positives = 89/141 (63%)
Frame = +2
Query: 137 EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 316
E A +P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGR
Sbjct: 15 EGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGR 74
Query: 317 AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXX 496
AV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 75 AVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAAT 134
Query: 497 XXXXXXQARGHIIEKIPELPL 559
ARGH IE +PE PL
Sbjct: 135 AVPSLVLARGHRIEGVPEFPL 155
Score = 75.4 bits (177), Expect = 5e-14
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = +3
Query: 546 PSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 725
P FP VV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I RKGP
Sbjct: 151 PEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGP 210
Query: 726 LIIFNKD-QGLTRAXRXXP 779
LI++ + + +A R P
Sbjct: 211 LIVYGTEGSKVVKAFRNLP 229
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 293 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 403
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>05_04_0292 + 19893895-19894983
Length = 362
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 209 GPDGWAP*TRTGGAWLHPAPSHSSLNTSTXKGRATDRLISL-L*RSYTSEIYTNSGDKDH 33
G D WAP GG LHP H++ + S + R +L + + + KDH
Sbjct: 211 GADSWAPLRVAGGIPLHPGFVHATRSKSELEPRPDSVFFTLDMLDKFLAMALPEGATKDH 270
Query: 32 P 30
P
Sbjct: 271 P 271
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 179 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 355
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 356 HRSGQGA 376
+ + + A
Sbjct: 168 NDNDEEA 174
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 398 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 291
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -2
Query: 371 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 270
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 368 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 270
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 535 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 428
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 215 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 385
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 386 MCRGGRMFAPTKPWRRW 436
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 278 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 382
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>02_01_0102 -
749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 695 QPSSYPA*GAPHNLQQGSGSDSRXPXXXP 781
Q YP+ GAPH + G GS S P P
Sbjct: 48 QQQGYPS-GAPHGMMGGGGSSSFPPSSGP 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,725,258
Number of Sequences: 37544
Number of extensions: 488594
Number of successful extensions: 1803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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