Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_K09
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 162 3e-40
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 1.0
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z75531-7|CAA99798.2| 316|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 29 5.3
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 29 5.3
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 28 9.3
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 162 bits (393), Expect = 3e-40
Identities = 78/145 (53%), Positives = 95/145 (65%)
Frame = +2
Query: 125 SMYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 304
++Y EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q SAESW
Sbjct: 8 TVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESW 66
Query: 305 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 484
GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126
Query: 485 XXXXXXXXXXQARGHIIEKIPELPL 559
QARGH+I+++ E+PL
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPL 151
Score = 90.2 bits (214), Expect = 2e-18
Identities = 41/75 (54%), Positives = 54/75 (72%)
Frame = +3
Query: 555 PWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 734
P VV+DKV+ KTK+AV+FLRR W+DI KVY S+R RAGKGK+RNR+ Q+ GP++I
Sbjct: 150 PLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVI 209
Query: 735 FNKDQGLTRAXRXXP 779
+ +D RA R P
Sbjct: 210 YGQDAECARAFRNIP 224
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +2
Query: 242 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 412
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 413 PTKP 424
KP
Sbjct: 197 APKP 200
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2
Query: 713 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 561
L+ +VA L TKT+RL+ + IRP + + L + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315
>Z75531-7|CAA99798.2| 316|Caenorhabditis elegans Hypothetical
protein C54D10.8 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +3
Query: 498 ASQRSFRLEDTLLKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRA 677
A +R +ED L + + QE+N+ + + L ++K W+D+++ ++RL +
Sbjct: 142 AQERLREIEDQLARDLEELRRCDQQRRQEMNEQMENIRRLLQMKIWNDVIESNWTKRLNS 201
Query: 678 GKGKMRNRRR 707
+ ++ R
Sbjct: 202 LRSSNKDVER 211
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 564 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 740
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 741 KD 746
KD
Sbjct: 473 KD 474
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 398 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 315
HHD +++H + ++ HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 564 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 740
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 741 KD 746
KD
Sbjct: 473 KD 474
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 535 NNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 428
N VS+ + + ++A +S G G S +E+D P P
Sbjct: 625 NGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,438,399
Number of Sequences: 27780
Number of extensions: 351714
Number of successful extensions: 1081
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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