Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_K08
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.028
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.038
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   2.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   4.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   10.0 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.9 bits (74), Expect = 0.028
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 343 PPPPPPXXGFXXKXXXPPPP 402
           PPPPPP  GF      PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.038
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 343 PPPPPPXXGFXXKXXXPPPPXXXXFXGGG 429
           PPPPPP  G       PPPP       GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 29.9 bits (64), Expect = 0.46
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 343 PPPPPPXXGFXXKXXXPPPPXXXXFXGGGXXXPP 444
           PPPPPP          PPPP      GG     P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 626 PPXXXXGXGGXXXPPPPPP 570
           PP    G  G   PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 628 PXPPXXXXXGXXXXPPPPPP 569
           P PP     G    PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 346 PPPPPXXGFXXKXXXPPPPXXXXFXGGGXXXPP 444
           PPP P  G       PPPP      G G   PP
Sbjct: 752 PPPAPIMG-----GPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 626 PPXXXXGXGGXXXPPPPPP 570
           PP       G   PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
 Frame = +1

Query: 343 PPPPPPXXGFXXKXXXP-PPPXXXXFXGGGXXXPP 444
           PPPPPP          P P P      GG    PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 603 GGXXXPPPPPPP 568
           GG   PPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.0 bits (47), Expect(2) = 4.4
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 343 PPPPPPXXGFXXKXXXPP 396
           PPPPPP          PP
Sbjct: 338 PPPPPPRSNAAGSIPLPP 355



 Score = 21.8 bits (44), Expect(2) = 4.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 334 SXYPPPPPP 360
           S  PPPPPP
Sbjct: 334 SSLPPPPPP 342


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 46  TQISATMSGGLDVLAPQRXKMXPKMVGWXXP 138
           T +   M+G    + PQR  M P+M G+  P
Sbjct: 463 TGLQPQMTGFQQPMVPQRTGMQPQMTGFQQP 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,766
Number of Sequences: 5004
Number of extensions: 27712
Number of successful extensions: 280
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)