Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_K07
         (945 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    28   9.4  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    28   9.4  

>11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,
            4004474-4004556,4004661-4004775,4005309-4005400,
            4005558-4005612,4005689-4005834,4005888-4006001,
            4006149-4006342,4006985-4007112,4008526-4008583,
            4009800-4009876,4010214-4010263,4010336-4010515,
            4010633-4010731,4010816-4011133,4011221-4011281,
            4011693-4012781,4012951-4013005,4013133-4013291,
            4013923-4014442
          Length = 1406

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -2

Query: 224  GDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNR*XE*YKSSTFYDN*SIEAIPSESS 45
            GD +S+VAR+ SI    + + +H  +      R+ +      +S    N   E  P+ + 
Sbjct: 1295 GDQQSFVARASSIKEQGETSLAHCESSTTLDCRKRKLSFQQAASIPVINLEPELAPAPAP 1354

Query: 44   RPTS 33
            +P+S
Sbjct: 1355 QPSS 1358


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 297 GGLGLTXVSMSQMQGQVDYDFGVGGRLPI 211
           GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 101 GGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,197,448
Number of Sequences: 37544
Number of extensions: 293179
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)