Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_K07
         (945 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen pro...    31   1.2  
Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical pr...    31   1.6  
AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen prot...    30   2.1  
U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    29   4.8  
U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protei...    29   4.8  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   6.4  
U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protei...    29   6.4  
M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.     29   6.4  
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    29   6.4  

>AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen
           protein 71 protein.
          Length = 371

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -3

Query: 919 GPHXPXRPXGXXXPXGXASAXRXXXXPXRPPPAXXPP 809
           GP  P  P G   P G A A      P RPP A   P
Sbjct: 175 GPPGPPGPPGRPGPNGKAGANGLNGNPGRPPEAPCEP 211


>Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical
           protein H06A10.2 protein.
          Length = 305

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/64 (34%), Positives = 23/64 (35%)
 Frame = -1

Query: 843 ARXGPPXPXXPPXXXAXAXXEGGAGXGXXPXGXXGCPAXXXXXXXXXGPGEKXPSFPXXA 664
           A   PP P  PP     A  +G AG    P G    PA         GPG   P  P   
Sbjct: 182 AAPSPPGPPGPPGPAGPAGNDGAAGT-PGPDG----PAGESTYPEPAGPGPAGPPGP-AG 235

Query: 663 PQGP 652
           P GP
Sbjct: 236 PPGP 239


>AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen protein
           102 protein.
          Length = 460

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/58 (31%), Positives = 20/58 (34%)
 Frame = -1

Query: 834 GPPXPXXPPXXXAXAXXEGGAGXGXXPXGXXGCPAXXXXXXXXXGPGEKXPSFPXXAP 661
           G P P  PP        E GAG G  P G  G P           PG+   +    AP
Sbjct: 209 GEPGPAGPPGPPGP-NGEAGAGSGPGPEGPAGPPGPNGKDGEAGAPGKDGDAGADGAP 265


>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
 Frame = -1

Query: 834 GPPXPXXPPXXXAXAXXEGGAGXGXXP--XGXXGCPAXXXXXXXXXGPGEKXPS 679
           GPP P  PP        +G AG        G  G P           PGEK P+
Sbjct: 159 GPPGPAGPPGPKGLPGPQGDAGTSGQDGVPGLPGPPGPSGPQGAPGVPGEKGPT 212


>U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protein
           140, isoform a protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/69 (27%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
 Frame = -1

Query: 861 PXGXXXARXGPPXPXXPPXXXAXAXXEG--GAGXGXXPXGXXGCPAXXXXXXXXXGPGEK 688
           P G      G P P  PP     A   G  G      P G  G P           PG  
Sbjct: 139 PGGCIQCPPGRPGPRGPPGEVGPAGPSGDNGRKGPPGPPGGPGGPGEGGDGGRPGNPGRP 198

Query: 687 XPSFPXXAP 661
            P+ P   P
Sbjct: 199 GPAGPRGEP 207


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = -1

Query: 834 GPPXPXXPPXXXAXAXXEGGAGXGXXPXGXXGCPAXXXXXXXXXGPG 694
           GPP P  PP     A  +G  G    P G  G P           PG
Sbjct: 224 GPPGPGGPPGDAGGAGSDGAPGP-QGPPGQDGTPGNAGPDGQPGSPG 269


>U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protein 8
           protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
 Frame = -1

Query: 840 RXGPPXPXXPP---XXXAXAXXEGGAGXGXXP--XGXXGCPAXXXXXXXXXGPGEKXP 682
           R GPP P  PP        A  +G  G    P   G  G P          GPGE  P
Sbjct: 211 RAGPPGPRGPPGPEGNPGGAGEDGNQGPVGHPGVPGRPGIPGKSGTCGEHGGPGEPGP 268


>M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
 Frame = -1

Query: 840 RXGPPXPXXPP---XXXAXAXXEGGAGXGXXP--XGXXGCPAXXXXXXXXXGPGEKXP 682
           R GPP P  PP        A  +G  G    P   G  G P          GPGE  P
Sbjct: 211 RAGPPGPRGPPGPEGNPGGAGEDGNQGPVGHPGVPGRPGIPGKSGTCGEHGGPGEPGP 268


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -1

Query: 843 ARXGPPXPXXPPXXXAXAXXEGGAGXGXXPXGXXGCPAXXXXXXXXXGP 697
           +R GPP P  PP         GG G G  P G  G P+         GP
Sbjct: 253 SRPGPPGPAGPPGPPGNNGAPGG-GYGVGPPGPPG-PSGRPGAPGQPGP 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,590,663
Number of Sequences: 27780
Number of extensions: 221959
Number of successful extensions: 701
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)