Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_K03
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    30   0.44 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.0  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    27   4.1  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.1  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    27   4.1  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.4  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    26   7.1  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   7.1  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    25   9.4  

>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 231 YTW*TRDSSPDGRTARTVKPSRYLRVGPCDTCGRTLWSGLQPGHRGLYSVAKKF 392
           Y W T ++  + +  R  +    L    C  CG  L+S   P   G++  A K+
Sbjct: 312 YEWYTNETEAEAKARRDKRLGELLTGKHCSECGTPLYSDPSPEELGIWLHALKY 365


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = -3

Query: 184 PSSGGI-APXLVAPR-----PTCFRMTLPPEGAVRCTPXRGDYSPPLAPRP 50
           PS+ G+ AP + AP      P  F+   PP  A   T    DY+PP  P P
Sbjct: 148 PSASGVNAPTVSAPNSMVSPPPSFQ---PPSAAAPATSLPSDYNPPPPPPP 195


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 275 RGPSIGAAVTCLPRVQPSG 219
           + PS+GA   C+P  QPSG
Sbjct: 670 KAPSMGAKSLCIPLEQPSG 688


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 630 RRFTIIGAASVLVSNRVGSTLVDTQTPCWSKRFVRRTGRSN 508
           +RF+    +S  +  R  + L D + P WS+R     G S+
Sbjct: 632 KRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAIGFSS 672


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 266 SIGAAVTCLPRVQPSGLHRPIRDSAVLAIIRRDCSXP 156
           SIG  VTC+ R  P+GL  P  D     +     S P
Sbjct: 230 SIGGTVTCVIRNVPTGLGEPCFDKLEAKLAHAMMSIP 266


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 776 PPPLSLNRFQSXSKPWKRAKRGLHPSTDPAQRATWP 669
           PPP++L R  + SK +  ++   HP TD   R   P
Sbjct: 736 PPPMALIRNSTRSKAYFDSEGKPHPITDSHNRLLVP 771


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 411 EASGLPLESERTGDNPTVRGSAGA 482
           E+ GL +E +R   NPTVR +  A
Sbjct: 90  ESKGLTVELQRVSSNPTVRDNVYA 113


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -2

Query: 611 ERHPYWSQTGWALR-LWTPKPPVGRKGSFAELAGPTRRIL 495
           E   YW   GW  R L T  P     GS   +A PT ++L
Sbjct: 397 EHQRYWVGVGWLNRTLPTDPPNFTNAGSTDPVAEPTAQLL 436


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 169 IAPXLVAP-RPTCFRMTLPPEGAVRCTPXRGDYSPPLAPRPTYCPVA 32
           +A  LV P RP  F   L   GA+ CTP         +PR + CP++
Sbjct: 201 LANELVDPVRPGDFNQALMELGAITCTPQ--------SPRCSVCPIS 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,564,195
Number of Sequences: 5004
Number of extensions: 81242
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)