Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_K03
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote defect... 33 0.23
AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote defec... 33 0.23
Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical pr... 31 1.2
U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative transc... 31 1.2
AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical... 29 3.8
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 29 5.0
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 5.0
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 28 6.7
Z75712-2|CAB00041.1| 254|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z36282-4|CAI06055.2| 801|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z31590-10|CAA83466.3| 801|Caenorhabditis elegans Hypothetical p... 28 8.8
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 28 8.8
DQ104391-1|AAZ08414.1| 801|Caenorhabditis elegans CNK-1 protein. 28 8.8
>AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote
defective-1 protein.
Length = 706
Score = 33.1 bits (72), Expect = 0.23
Identities = 23/86 (26%), Positives = 34/86 (39%)
Frame = +3
Query: 243 TRDSSPDGRTARTVKPSRYLRVGPCDTCGRTLWSGLQPGHRGLYSVAKKFIKGNRPEASG 422
+R+ S DGR R+ +P R R + S QP H G ++ + I P S
Sbjct: 261 SREHSRDGRRQRSREPVRSSRDDRSRDGRALIRSSSQPAHSGRAPLSNRPIHDRMPSTSS 320
Query: 423 LPLESERTGDNPTVRGSAGADPVGQD 500
+SER + G P +D
Sbjct: 321 RGFDSERGRERDRDSGRGTVPPSRED 346
>AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote
defective: embryonic lethalprotein 1 protein.
Length = 706
Score = 33.1 bits (72), Expect = 0.23
Identities = 23/86 (26%), Positives = 34/86 (39%)
Frame = +3
Query: 243 TRDSSPDGRTARTVKPSRYLRVGPCDTCGRTLWSGLQPGHRGLYSVAKKFIKGNRPEASG 422
+R+ S DGR R+ +P R R + S QP H G ++ + I P S
Sbjct: 261 SREHSRDGRRQRSREPVRSSRDDRSRDGRALIRSSSQPAHSGRAPLSNRPIHDRMPSTSS 320
Query: 423 LPLESERTGDNPTVRGSAGADPVGQD 500
+SER + G P +D
Sbjct: 321 RGFDSERGRERDRDSGRGTVPPSRED 346
>Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical
protein C40H5.5 protein.
Length = 409
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -3
Query: 238 HVYSHPGYTVP*GTVRCSPSSGGIAPXLVAPRPTCFRMTLPPEGAVRCTPXR 83
H+Y H Y TV C ++ P +VAP P T P A P R
Sbjct: 219 HLYCHAHYNAVRSTVLCEEAAVATVPAVVAPPPPPPTTTTAPPPAAPEQPPR 270
>U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative
transcription factor TTX-3 protein.
Length = 409
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -3
Query: 238 HVYSHPGYTVP*GTVRCSPSSGGIAPXLVAPRPTCFRMTLPPEGAVRCTPXR 83
H+Y H Y TV C ++ P +VAP P T P A P R
Sbjct: 219 HLYCHAHYNAVRSTVLCEEAAVATVPAVVAPPPPPPTTTTAPPPAAPEQPPR 270
>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
protein Y22D7AR.2 protein.
Length = 1140
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 358 ATEGYTLLQKSS*KEIDLKPLASRWSQRGQVITRLCGVPPAQI 486
AT G T +Q+ + +DLKPL WS R +V + + PA +
Sbjct: 753 ATRGITDMQRMGSQTVDLKPLKD-WSARIEVEMKKHELDPADV 794
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 463 TVGLSPVLSDSSGRPEASGLFPFMNF 386
T+ + LSDSSGRP A GL + NF
Sbjct: 553 TLSSNAQLSDSSGRPGAVGLVNYGNF 578
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -2
Query: 347 TRPQGSPAGIARPHPKVPARLDGPRGPSIGAAVTCLPRVQPSGLHRPIRDS 195
T P+ P IA P P+ G +GP+I VT P V P PI S
Sbjct: 1776 TEPE-EPLPIATPAPQPTEHTYGAQGPNIVPVVTAAPYV-PQETQAPIAPS 1824
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 343 RVCSPATEGYTLLQKSS*KEIDLKPLASRWSQRGQVITRLCGVPPAQI 486
R+C TE Y L ++ +E D+K L R Q + G+ PA++
Sbjct: 1062 RICKLETEKYDLEKRHERQEYDMKELNERQRQVTRNSALKKGIDPAEV 1109
>Z75712-2|CAB00041.1| 254|Caenorhabditis elegans Hypothetical
protein K04G2.4 protein.
Length = 254
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = -2
Query: 659 RGGRFPRHATAASPSSERHPYWSQTGWALRLWTPKPPVGRKGSFAELAGPTRRI 498
+ P + P + P + Q +A + P P +G K E A P R++
Sbjct: 116 QASEIPIERMGSDPHTAIAPTYQQKQFATSTYYPMPTIGEKQKSPEKAKPARKV 169
>Z36282-4|CAI06055.2| 801|Caenorhabditis elegans Hypothetical
protein R01H10.8 protein.
Length = 801
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 760 LIVSRVXPNPGSAPKE--VSTRALTPLSEQXGLGASEEVDFLAMPPPLHHHRS 608
LIV R P PK+ ++ RAL P S+ ++++ D PL HRS
Sbjct: 339 LIVKR-RPREPQLPKQSKLAARALAPSSQTAKTYSTDDYDPFGQSEPLKRHRS 390
>Z31590-10|CAA83466.3| 801|Caenorhabditis elegans Hypothetical
protein R01H10.8 protein.
Length = 801
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 760 LIVSRVXPNPGSAPKE--VSTRALTPLSEQXGLGASEEVDFLAMPPPLHHHRS 608
LIV R P PK+ ++ RAL P S+ ++++ D PL HRS
Sbjct: 339 LIVKR-RPREPQLPKQSKLAARALAPSSQTAKTYSTDDYDPFGQSEPLKRHRS 390
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 27.9 bits (59), Expect = 8.8
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +3
Query: 288 PSRYLRVGPCDTCGRTLWSGLQPGHRGLYSVAKKFIKGNRPEASGLPLESERTGDNPTVR 467
P R PC C + +G+ PGH G ++ G RP + G+P + GD P +
Sbjct: 159 PERVFEPPPCLPCPQGP-AGV-PGHPGFPGDPGEYGIGGRPGSDGMP---GKPGD-PGLA 212
Query: 468 GSAGADPVGQDAP 506
G G P G+ P
Sbjct: 213 GPIG--PPGESGP 223
>DQ104391-1|AAZ08414.1| 801|Caenorhabditis elegans CNK-1 protein.
Length = 801
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 760 LIVSRVXPNPGSAPKE--VSTRALTPLSEQXGLGASEEVDFLAMPPPLHHHRS 608
LIV R P PK+ ++ RAL P S+ ++++ D PL HRS
Sbjct: 339 LIVKR-RPREPQLPKQSKLAARALAPSSQTAKTYSTDDYDPFGQSEPLKRHRS 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,272,453
Number of Sequences: 27780
Number of extensions: 555455
Number of successful extensions: 1872
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1869
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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