Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_K02
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 234 5e-62
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 231 5e-61
06_03_0871 - 25562767-25563509,25563889-25565776 30 1.9
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 3.3
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.8
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.8
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 7.7
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.7
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 7.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 234 bits (573), Expect = 5e-62
Identities = 109/178 (61%), Positives = 134/178 (75%)
Frame = +2
Query: 53 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 232
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 233 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 412
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 413 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLM 586
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG +
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCL 178
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 231 bits (565), Expect = 5e-61
Identities = 106/167 (63%), Positives = 128/167 (76%)
Frame = +2
Query: 86 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 265
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 266 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 445
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 446 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLM 586
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG +
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCL 178
>06_03_0871 - 25562767-25563509,25563889-25565776
Length = 876
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = -3
Query: 660 PQHPSXGHGEAHHEASALHVPTTTTIKPIEWE-----DLVLHGIAMSTNLSGESVLHKAI 496
PQH S H HH+A+A P T+ ++ + + +L A +G S+++KA+
Sbjct: 501 PQHHSKKHDHPHHQAAAA-PPAPATLVTVDGDGELEMETLLKASAYILGATGSSIVYKAV 559
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -3
Query: 648 SXGHGEAHHEAS--ALHVPTTTTIKPIEWEDLVLHGIAMSTNLSGESVLHKAITGMLTYE 475
S H E A A+H T + + + L LH A S N ES LH+A+ E
Sbjct: 1315 SSTHAEKEEAAEKLAVHERTISHLTEVHTRSLELHSAAESKNEEIESKLHEALEMAAQKE 1374
Query: 474 ASV 466
A V
Sbjct: 1375 AEV 1377
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 153 TFSAPRWVVAASILVTSSSLRASTSNP 73
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 331 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 438
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 335 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 180
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 160 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 267
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +1
Query: 106 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 285
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 286 VRHLITALRSACCTEVCR 339
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,004,251
Number of Sequences: 37544
Number of extensions: 550687
Number of successful extensions: 1422
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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