Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_J19
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.20 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.79 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = +2

Query: 299 EAL-NPIKQDVKKGNLRFVNNVFPHR-----GY-IWNYDALPQT-WENPN 424
           EAL N IK    KGN+R    +FP R      Y +WN+  +    ++NP+
Sbjct: 151 EALCNHIKYSTNKGNIRSAITIFPQRTDGKHDYRVWNHQLISYAGYKNPD 200


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 11/56 (19%), Positives = 25/56 (44%)
 Frame = +1

Query: 190  IAHARHSTMGRQSSTPRQHGSRST*MDQCENGDQPRGGPQSYQAGRKERQPSVREQ 357
            + H+   T  +Q    +Q   +     Q +   Q +  PQ  Q  ++++QP  +++
Sbjct: 1493 VDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQK 1548


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 605 RGXVNDVQXVEALFPXPP 658
           R  VN VQ ++ALF  PP
Sbjct: 21  RKPVNPVQELKALFAEPP 38


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/47 (21%), Positives = 21/47 (44%)
 Frame = +1

Query: 220 RQSSTPRQHGSRST*MDQCENGDQPRGGPQSYQAGRKERQPSVREQR 360
           +Q    +QH  +        N  QP+   Q  Q  ++++Q   ++Q+
Sbjct: 416 QQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQ 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,629
Number of Sequences: 438
Number of extensions: 3663
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)