Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_J04
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 287 5e-78
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 284 5e-77
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678... 30 2.5
05_06_0209 - 26389902-26389928,26389981-26390161,26390265-263904... 29 4.4
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 29 5.8
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.8
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 7.6
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.6
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 7.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 287 bits (705), Expect = 5e-78
Identities = 132/218 (60%), Positives = 166/218 (76%)
Frame = +3
Query: 51 ISATMSGGLDVLALNEEDATKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 230
++A G L+ E+D MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 231 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 410
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 411 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPYNTKSSHSIGLMWW 590
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 591 LLAREVLRLRGVLPRXQRWDVVVDLFFYRDPEESEKDE 704
LLAR VL++RG + +WDV+VDLFFYRDPEE+++ E
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQE 218
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 284 bits (697), Expect = 5e-77
Identities = 130/207 (62%), Positives = 160/207 (77%)
Frame = +3
Query: 84 LALNEEDATKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 263
L+ E+D MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 264 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 443
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 444 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPYNTKSSHSIGLMWWLLAREVLRLRG 623
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 624 VLPRXQRWDVVVDLFFYRDPEESEKDE 704
+ +WDV+VDLFFYRDPEE+++ E
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAKEQE 218
>09_06_0177 +
21365314-21366100,21367451-21367578,21367715-21367870,
21368006-21368196,21369392-21369434,21369537-21369627,
21369859-21369935,21370278-21370366,21370474-21370657,
21370885-21371138,21371465-21371567,21371646-21371977,
21372060-21372504
Length = 959
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -3
Query: 801 MKPRAPVFIPVFMDRSNYXW---FSWYHSLFLGFVVHPFHFLQGHG 673
++P A P+FM+RSN W S ++ GF+ P G G
Sbjct: 821 IRPSAKQLYPLFMNRSNISWDAFSSQVQTIQKGFIGEPMEITPGRG 866
>05_06_0209 -
26389902-26389928,26389981-26390161,26390265-26390407,
26390480-26390588,26390839-26391023,26391428-26392082,
26392392-26392496,26392757-26392844,26392885-26392947,
26393451-26393513,26394328-26394484
Length = 591
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +3
Query: 354 PIAGRFTPGAFTNQIQAAFREPRLLIVLD---PAQDHQPITEASYVNIPVIALCNTDSPL 524
P +GR TP A+ ++I + + RL+ DH+P+T ++ V+ L
Sbjct: 514 PKSGRRTP-AWCDRILSRGKGIRLISYRRGELKLSDHRPVTAVFMADVEVLCHRKLQKAL 572
Query: 525 RFVDIAIPYNTKSSHSIG 578
F D + Y+ SS + G
Sbjct: 573 TFTDAEVEYHLASSSAEG 590
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -2
Query: 565 EDLVLYGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRGSRNAAWIWLV 386
ED LY I + S E + ITG V+ S G + +K R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 385 K 383
K
Sbjct: 64 K 64
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 329 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 436
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 333 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 178
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 158 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 265
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +2
Query: 104 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 283
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 284 VRHLITALRSACCTEVCR 337
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,847,270
Number of Sequences: 37544
Number of extensions: 554879
Number of successful extensions: 1381
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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