Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_I24
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   161   1e-40
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   156   4e-39
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.30 
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   8.4  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    25   8.4  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  161 bits (390), Expect = 1e-40
 Identities = 73/112 (65%), Positives = 90/112 (80%)
 Frame = +2

Query: 83  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLCRTWEKLVLAARAVV 262
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 263 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFRE 418
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +RE
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYRE 121


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  156 bits (378), Expect = 4e-39
 Identities = 69/116 (59%), Positives = 91/116 (78%)
 Frame = +2

Query: 71  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLCRTWEKLVLAA 250
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 251 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFRE 418
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +RE
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYRE 120


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
 Frame = -1

Query: 722 PPPPXXXXXXPPPPXXG-GGXGXXXXPPXPXXXGGG 618
           PP P      PPPP  G  G G    PP P     G
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 29.1 bits (62), Expect = 0.68
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -1

Query: 722 PPPPXXXXXXPPPPXXGGGXGXXXXPPXP 636
           PPP       PPPP   G  G    PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -1

Query: 722 PPPPXXXXXXPPPPXXGGGXGXXXXPPXPXXXGGG 618
           PPPP      PPPP   G       PP P    GG
Sbjct: 761 PPPP------PPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 619 PPPXXXGXGGXXXXPXPPPXXGGGG 693
           PPP      G    P PPP    GG
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 623 PPXXXXXGGXXXXPPPPXXXGGG 691
           PP     GG    PPPP   G G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
 Frame = -3

Query: 723 PPXPXXXXX--XPPPPXXXGGGGXXXXPPXXXXXGGG 619
           PP P        PPPP   G G     PP      GG
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -1

Query: 290 RTHQRGSRWLRQHEQPEQVFPRYDT 216
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +2

Query: 206 VINLCRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 382
           V+++  TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,895
Number of Sequences: 5004
Number of extensions: 55481
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)