Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_I19
(812 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 36 6e-04
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 35 8e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 34 0.001
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 33 0.002
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 33 0.002
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 33 0.002
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 33 0.003
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.004
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 33 0.004
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 32 0.005
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.013
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.013
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.017
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.022
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.022
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 30 0.029
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 29 0.051
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.068
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.068
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.068
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 27 0.16
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 27 0.16
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 27 0.16
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 27 0.27
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 4.4
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 22 7.8
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 22 7.8
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 36.7 bits (81), Expect = 3e-04
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAAATTAGDYXL----RARVSNNGSVSWIKRLDISTPISMXXHXXP 483
V S+ +WRPD+VL N A G+Y + +A V +G V W + S+ P
Sbjct: 105 VPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFP 161
Query: 484 TDMXTCTXXSGS 519
D+ TC GS
Sbjct: 162 YDVQTCVLKLGS 173
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 35.5 bits (78), Expect = 6e-04
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +1
Query: 325 ERLWRPDVVLLNAAATTAGDYXLRAR----VSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
+++W+PD+VL N A G+Y +R + + NG V W+ + ++ P D
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQ 162
Query: 493 XTCTXXSGS 519
TC GS
Sbjct: 163 QTCIMKFGS 171
Score = 23.8 bits (49), Expect = 1.9
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 165 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNA---GGMGLQHL 311
K+ VN L ++ N+ E ++ L+ W D +L W+ GG+G+ L
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRL 103
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 35.1 bits (77), Expect = 8e-04
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1
Query: 292 EWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYXL-RARVSNNGSVSWIKRLDISTPISM 465
E+G T L V SE +W PD+VL N A G + +A + G V W + +
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEI 147
Query: 466 XXHXXPTDMXTCTXXSGS 519
P D TC GS
Sbjct: 148 DVRYFPFDQQTCFMKFGS 165
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.7 bits (76), Expect = 0.001
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
V S+ +WRPD+VL NA +A + + G V W + + P D
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDE 164
Query: 493 XTCTXXSGS 519
TC GS
Sbjct: 165 QTCVLKFGS 173
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 34.3 bits (75), Expect = 0.001
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLL-NAAATTAGDYXLRARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
V S+ +WRPD+VL NA +A ++ G V W + + P D
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDE 160
Query: 493 XTCTXXSGS 519
TC GS
Sbjct: 161 QTCVMKFGS 169
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 33.5 bits (73), Expect = 0.002
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = +1
Query: 325 ERLWRPDVVLLNAAATTAGDYXLR---ARVSNNGSVSWIKRLDISTPISMXXHXXPTDMX 495
ER+WRPD N + + R+S +G + + RL I M P D
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQ 174
Query: 496 TCTXXSGS 519
+C GS
Sbjct: 175 SCPLILGS 182
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 33.5 bits (73), Expect = 0.002
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 322 SERLWRPDVVLLNAAATTAGDYXLR---ARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
+E++W PD N + D R R+S +GSV++ R + M H P D
Sbjct: 113 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDS 172
Query: 493 XTCT 504
CT
Sbjct: 173 QNCT 176
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 33.5 bits (73), Expect = 0.002
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +3
Query: 87 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 251
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 252 MNWIDKRLSWNA 287
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 33.1 bits (72), Expect = 0.003
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = +1
Query: 298 GCSTWLVSSERLWRPDVVLLNAAATTAGDYXL----RARVSNNGSVSWIKRLDISTPISM 465
G V SE +W PD+VL N A G+Y + +A + G VSW + +
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSWKPPAIYKSSCEI 160
Query: 466 XXHXXPTDMXTCTXXSGS 519
P D +C GS
Sbjct: 161 NVEYFPFDEQSCIMKFGS 178
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.004
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 93 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 260
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 261 IDKRLSWNAG 290
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 32.7 bits (71), Expect = 0.004
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
+ RLW+PDV++ N+A G Y V NNG+ ++ + + P D
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDD 159
Query: 493 XTCTXXSGS 519
C GS
Sbjct: 160 QRCEMKFGS 168
Score = 22.2 bits (45), Expect = 5.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +3
Query: 438 LGH*HSNFYAVTXXAHRHA 494
+GH HS+ +A H HA
Sbjct: 419 MGHGHSHIHATPHHHHSHA 437
Score = 21.8 bits (44), Expect = 7.8
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Frame = +3
Query: 66 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 230
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 231 RILADLQMNWIDKRLSWNAGGMG 299
L++ W D + WN G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 32.3 bits (70), Expect = 0.005
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +1
Query: 298 GCSTWLVSSERLWRPDVVLLNAAATTAGDYXL----RARVSNNGSVSWIKRLDISTPISM 465
G T V SE +W PD+VL N A G+Y + +A + + G V W + +
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEI 147
Query: 466 XXHXXPTDMXTCTXXSGS 519
P D TC GS
Sbjct: 148 DVEYFPFDEQTCFMKFGS 165
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.1 bits (67), Expect = 0.013
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
++ +LW+PD+++ N+A G Y V++NGS ++ + + P D
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 190
Query: 493 XTCTXXSGS 519
C GS
Sbjct: 191 QHCDMKFGS 199
Score = 24.6 bits (51), Expect = 1.1
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +3
Query: 114 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 278
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 279 WNAGGMG 299
WN G
Sbjct: 118 WNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.1 bits (67), Expect = 0.013
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
++ +LW+PD+++ N+A G Y V++NGS ++ + + P D
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 190
Query: 493 XTCTXXSGS 519
C GS
Sbjct: 191 QHCDMKFGS 199
Score = 24.6 bits (51), Expect = 1.1
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +3
Query: 114 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 278
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 279 WNAGGMG 299
WN G
Sbjct: 118 WNESEYG 124
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.017
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
++ +LW+PD+++ N+A G Y V++NGS ++ + + P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 122
Query: 493 XTCTXXSGS 519
C GS
Sbjct: 123 QHCDMKFGS 131
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.022
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
++ +LW+PD+++ N+A G Y V+++GS ++ + M P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDD 122
Query: 493 XTCTXXSGS 519
C GS
Sbjct: 123 QHCDMKFGS 131
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.022
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
++ +LW+PD+++ N+A G Y V+++GS ++ + M P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDD 122
Query: 493 XTCTXXSGS 519
C GS
Sbjct: 123 QHCDMKFGS 131
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 29.9 bits (64), Expect = 0.029
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAAATTAGDYXLRAR--VSNNGSVSWIKRLDISTPISMXXHXXPTD 489
V R+WRPD +L N A + VS+ G V W+ + + P D
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFD 141
Query: 490 MXTC 501
C
Sbjct: 142 EQRC 145
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 29.1 bits (62), Expect = 0.051
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +3
Query: 114 MIDSLLATYDR------ESPPDSKIVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKR 272
++D++L YD E+ D +V + L +R A I + + + + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 273 LSWNAGGMGLQHL 311
L +N G L++L
Sbjct: 95 LRFNDFGGRLKYL 107
Score = 26.6 bits (56), Expect = 0.27
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +1
Query: 313 LVSSERLWRPDVVLLNAAATTAGDYXLR---ARVSNNGSVSWIKRLDISTPISMXXHXXP 483
L + R+W PD+ N + + R+ NGSV + R+ ++ M P
Sbjct: 109 LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYP 168
Query: 484 TDMXTCTXXSGS 519
D C+ S
Sbjct: 169 LDRQVCSLRMAS 180
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.068
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
++ +LW+PD+++ N+A G Y V+++GS ++ + + P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDD 122
Query: 493 XTCTXXSGS 519
C GS
Sbjct: 123 QHCDMKFGS 131
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.068
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
++ +LW+PD+++ N+A G Y V+++GS ++ + + P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDD 122
Query: 493 XTCTXXSGS 519
C GS
Sbjct: 123 QHCDMKFGS 131
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.068
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 316 VSSERLWRPDVVLLNAA-ATTAGDYXLRARVSNNGSVSWIKRLDISTPISMXXHXXPTDM 492
++ +LW+PD+++ N+A G Y V+++GS ++ + + P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDD 122
Query: 493 XTCTXXSGS 519
C GS
Sbjct: 123 QHCDMKFGS 131
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 299
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.5 bits (58), Expect = 0.16
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Frame = +1
Query: 298 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYXLRARVSNNGSVSWIKRLDIS 450
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 79 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 135
Query: 451 TPISMXXHXXPTDMXTC 501
M P D C
Sbjct: 136 ASCPMNLQYFPMDRQLC 152
Score = 23.4 bits (48), Expect = 2.5
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 93 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 260
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 261 IDKRLSW 281
D RL++
Sbjct: 68 TDPRLAF 74
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.5 bits (58), Expect = 0.16
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Frame = +1
Query: 298 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYXLRARVSNNGSVSWIKRLDIS 450
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 79 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 135
Query: 451 TPISMXXHXXPTDMXTC 501
M P D C
Sbjct: 136 ASCPMNLQYFPMDRQLC 152
Score = 22.2 bits (45), Expect = 5.9
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 93 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 260
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 261 IDKRLSW 281
D RL++
Sbjct: 68 TDPRLAF 74
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 27.5 bits (58), Expect = 0.16
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Frame = +1
Query: 298 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYXLRARVSNNGSVSWIKRLDIS 450
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 18 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 74
Query: 451 TPISMXXHXXPTDMXTC 501
M P D C
Sbjct: 75 ASCPMNLQYFPMDRQLC 91
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 26.6 bits (56), Expect = 0.27
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +1
Query: 313 LVSSERLWRPDVVLLNAAATTAGDYXLR---ARVSNNGSVSWIKRLDISTPISMXXHXXP 483
L + R+W PD+ N + + R+ NGSV + R+ ++ M P
Sbjct: 109 LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYP 168
Query: 484 TDMXTCTXXSGS 519
D C+ S
Sbjct: 169 LDRQVCSLRMAS 180
Score = 26.2 bits (55), Expect = 0.36
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +3
Query: 114 MIDSLLATYDR------ESPPDSKIVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKR 272
++D++L YD E+ D VV + + +R + I + + + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWLDER 94
Query: 273 LSWNAGGMGLQHL 311
L +N G L++L
Sbjct: 95 LRFNDFGGRLKYL 107
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.6 bits (46), Expect = 4.4
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +1
Query: 325 ERLWRPDVVLLNAAATTAGDYXLR---ARVSNNGSVSWIKRLDISTPISMXXHXXPTDMX 495
+ LW+PD LNA + + + N +V + R+ M P D+
Sbjct: 69 DSLWQPDPYFLNAKVSEIAALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMDIQ 128
Query: 496 TC 501
C
Sbjct: 129 IC 130
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 21.8 bits (44), Expect = 7.8
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 147 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGGMGLQHLAGVL- 323
E + ++N L + + + ++ + D + N + + S AGG+ + AG++
Sbjct: 233 EGDDQQRAIINTLLSISASCVIAFATSALVSKDSKFNMVHIQNSTLAGGVAIGTAAGMMC 292
Query: 324 ---GTLV 335
GTL+
Sbjct: 293 QPVGTLI 299
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +3
Query: 483 HRHAXLHXQXRXXRCT 530
HRH +H R +CT
Sbjct: 164 HRHMRIHTGERPHKCT 179
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,196
Number of Sequences: 438
Number of extensions: 4226
Number of successful extensions: 51
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -