Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_I14
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.048
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 28 1.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.048
Identities = 17/36 (47%), Positives = 17/36 (47%)
Frame = +2
Query: 296 PPXYFXGGXRGXFPPPPXXGXXGGXXPPPPXXKPPP 403
PP GG PPPP G G PPPP PPP
Sbjct: 753 PPAPIMGGPP---PPPPPPGVAGAGPPPPP--PPPP 783
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 365 PPPXXXXGGGEXTPGXPXKNXXGXPXFPPP 276
PPP GG P P G P PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 337 PPPXKXXGGGXXPPPP 384
PPP GG PPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 278 GGEXXAPPXYFXGGXRGXFPPPPXXGXXGGXXPPPPXXKPP 400
G PP + G PPPP G PPPP P
Sbjct: 204 GEHMPPPPMHHKPGEH--MPPPPMHHEPGEHMPPPPMHHEP 242
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 278 GGEXXAPPXYFXGGXRGXFPPPPXXGXXGGXXPPPPXXKPP 400
G PP + G PPPP G PPPP P
Sbjct: 217 GEHMPPPPMHHEPGEH--MPPPPMHHEPGEHMPPPPMHHEP 255
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 278 GGEXXAPPXYFXGGXRGXFPPPPXXGXXGGXXPPPPXXKPP 400
G PP + G PPPP G PPPP P
Sbjct: 230 GEHMPPPPMHHEPGEH--MPPPPMHHEPGEHMPPPPMHHEP 268
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 278 GGEXXAPPXYFXGGXRGXFPPPPXXGXXGGXXPPPPXXKPP 400
G PP + G PPPP G PPPP P
Sbjct: 243 GEHMPPPPMHHEPGEH--MPPPPMHHEPGEHMPPPPMHHEP 281
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 278 GGEXXAPPXYFXGGXRGXFPPPPXXGXXGGXXPPPPXXKPP 400
G PP + G PPPP G PPPP P
Sbjct: 256 GEHMPPPPMHHEPGEH--MPPPPMHHEPGEHMPPPPMHHEP 294
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 278 GGEXXAPPXYFXGGXRGXFPPPPXXGXXGGXXPPPPXXKPP 400
G PP + G PPPP G PPPP P
Sbjct: 269 GEHMPPPPMHHEPGEH--MPPPPMHHEPGEHMPPPPMHHEP 307
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 278 GGEXXAPPXYFXGGXRGXFPPPPXXGXXGGXXPPPPXXKPP 400
G PP + G PPPP G PPPP P
Sbjct: 282 GEHMPPPPMHHEPGEH--MPPPPMHHEPGEHMPPPPMHHEP 320
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 278 GGEXXAPPXYFXGGXRGXFPPPPXXGXXGGXXPPPPXXKPP 400
G PP + G PPPP G PPPP P
Sbjct: 295 GEHMPPPPMHHEPGEH--MPPPPMHHEPGEHMPPPPMHHEP 333
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 278 GGEXXAPPXYFXGGXRGXFPPPPXXGXXGGXXPPPP 385
G PP + G PPPP G PPPP
Sbjct: 308 GEHMPPPPMHHEPGEH--MPPPPMHHEPGEHMPPPP 341
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 335 PPPPXXGXXGGXXPPPPXXKPPP 403
PPPP G PPPP PPP
Sbjct: 11 PPPPPPGFEPPSQPPPP---PPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = -1
Query: 401 GGVXXXGGGGXXPPPXXXXGGGEXTPGXPXKNXXGXPXFPPPXGXFXXPP 252
GG GGG PPP GG G + G F G F P
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = +2
Query: 335 PPPPXXGXXGGXXPPPPXXK--PPP 403
PPPP G P PP + PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPP 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,945
Number of Sequences: 5004
Number of extensions: 26986
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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