Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_I10
(859 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 50 3e-08
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 47 2e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 47 2e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 46 3e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 46 6e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 44 2e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 44 2e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 43 3e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 43 4e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 42 7e-06
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 42 7e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 39 5e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 5e-05
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 32 0.006
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 31 0.014
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 30 0.031
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 29 0.055
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 29 0.055
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 27 0.29
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.3
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 50.0 bits (114), Expect = 3e-08
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Frame = +3
Query: 57 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 215
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 216 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 353
+ L+ W D + W+ E+G T L V SE +W PD+VL N A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
Score = 32.7 bits (71), Expect = 0.004
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 370 TTLSAPVYLITAPVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSXMHNSDEMD 534
TT++ + T V W + + + +P D QTC KFGS ++ ++D
Sbjct: 120 TTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGIQID 174
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.2 bits (107), Expect = 2e-07
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Frame = +3
Query: 102 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 266
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 267 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSGL 413
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS L
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168
Score = 27.1 bits (57), Expect = 0.22
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 466 WPNDMQTCTFKFGSXMHNSDEMDFVI 543
+P D Q C KFGS ++ +++D V+
Sbjct: 186 FPFDDQHCDMKFGSWTYDGNQVDLVL 211
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.2 bits (107), Expect = 2e-07
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Frame = +3
Query: 102 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 266
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 267 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSGL 413
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS L
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCL 168
Score = 27.1 bits (57), Expect = 0.22
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 466 WPNDMQTCTFKFGSXMHNSDEMDFVI 543
+P D Q C KFGS ++ +++D V+
Sbjct: 186 FPFDDQHCDMKFGSWTYDGNQVDLVL 211
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 46.4 bits (105), Expect = 3e-07
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 192 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 365
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 366 GDYALRARVSNNGSGL 413
G Y V++NGS L
Sbjct: 85 GTYQTSVVVTHNGSCL 100
Score = 27.1 bits (57), Expect = 0.22
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 466 WPNDMQTCTFKFGSXMHNSDEMDFVI 543
+P D Q C KFGS ++ +++D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 45.6 bits (103), Expect = 6e-07
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Frame = +3
Query: 48 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRES 206
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 207 ESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 353
T + ++ W D +L WN ++G T V SE +W PD+VL N A
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
Score = 26.6 bits (56), Expect = 0.29
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 370 TTLSAPVYLITAPVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSXMHNSDEMD 534
T ++ + T V W + + ++ +P D QTC KFGS ++ +D
Sbjct: 120 TIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYTVD 174
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 45.2 bits (102), Expect = 8e-07
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +3
Query: 75 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 239
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 240 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 341
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
Score = 26.2 bits (55), Expect = 0.39
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 466 WPNDMQTCTFKFGSXMHNSDEM 531
WP D+ CT S H S+E+
Sbjct: 166 WPYDILNCTIHIASWSHGSNEI 187
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 192 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 365
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 366 GDYALRARVSNNGSGL 413
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
Score = 27.1 bits (57), Expect = 0.22
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 466 WPNDMQTCTFKFGSXMHNSDEMDFVI 543
+P D Q C KFGS ++ +++D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 192 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 365
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 366 GDYALRARVSNNGSGL 413
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
Score = 27.1 bits (57), Expect = 0.22
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 466 WPNDMQTCTFKFGSXMHNSDEMDFVI 543
+P D Q C KFGS ++ +++D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 192 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 365
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 366 GDYALRARVSNNGSGL 413
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
Score = 27.1 bits (57), Expect = 0.22
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 466 WPNDMQTCTFKFGSXMHNSDEMDFVI 543
+P D Q C KFGS ++ +++D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 192 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 365
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 366 GDYALRARVSNNGSGL 413
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
Score = 27.1 bits (57), Expect = 0.22
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 466 WPNDMQTCTFKFGSXMHNSDEMDFVI 543
+P D Q C KFGS ++ +++D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 192 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 365
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 366 GDYALRARVSNNGSGL 413
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 451 MQLDNWPNDMQTCTFKFGSXMHNSDEMDFVI 543
M + +P D Q C KFGS ++ +++D V+
Sbjct: 113 MDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 44.0 bits (99), Expect = 2e-06
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +3
Query: 75 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 233
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 234 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 353
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
Score = 29.9 bits (64), Expect = 0.031
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 400 TAPVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSXMHNSDEMD 534
T V W + + ++ +P D QTC KFGS ++ ++D
Sbjct: 134 TGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVD 178
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 44.0 bits (99), Expect = 2e-06
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Frame = +3
Query: 54 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 218
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 219 RILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARV 392
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 393 SNNGSGL 413
NNG+ L
Sbjct: 131 KNNGTCL 137
Score = 27.9 bits (59), Expect = 0.13
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 466 WPNDMQTCTFKFGSXMHNSDEMDFVIDXR----IYSMXXSGAWDV 588
+P D Q C KFGS ++ ++D + I S +G WD+
Sbjct: 155 FPFDDQRCEMKFGSWTYDGFQLDLQLQDEAGGDISSFITNGEWDL 199
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 43.2 bits (97), Expect = 3e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = +3
Query: 102 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 266
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 267 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 353
WN E+G L V SE +W PD+VL N A
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
Score = 32.7 bits (71), Expect = 0.004
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 370 TTLSAPVYLITAPVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSXMHNSDEMD 534
T ++ T VSW + + ++ +P D Q+C KFGS +N ++D
Sbjct: 133 TLMTKATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYNGAQVD 187
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 42.7 bits (96), Expect = 4e-06
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +3
Query: 81 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 248
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 249 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 347
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 31.1 bits (67), Expect = 0.014
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 409 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 507
V + RL I M L+N+P D Q C +FGS
Sbjct: 118 VLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 7e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +3
Query: 102 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 266
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 267 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 353
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
Score = 27.9 bits (59), Expect = 0.13
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 409 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSXMHNSDEMD 534
V W + S+ ++ +P D+QTC K GS ++ ++D
Sbjct: 141 VVWQPPAVYKSSCSIDVEFFPYDVQTCVLKLGSWTYDGFKVD 182
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 7e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +3
Query: 102 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 266
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 267 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 353
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
Score = 28.3 bits (60), Expect = 0.096
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 409 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSXMHNSDEMD 534
V W + + ++ +P D QTC KFGS ++ ++D
Sbjct: 141 VEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVD 182
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 39.1 bits (87), Expect = 5e-05
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 153 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 326
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 327 PDVVLLNAAATTAGDYALR 383
PD+VL N A G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126
Score = 34.7 bits (76), Expect = 0.001
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +1
Query: 409 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSXMHNSDEMDFVIDXR-----IYSMXXS 573
V W+ + ++ + +P D QTC KFGS N D++ + + S
Sbjct: 139 VLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKS 198
Query: 574 GAWDVTDL 597
G WD+ ++
Sbjct: 199 GTWDIINV 206
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.1 bits (87), Expect = 5e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 156 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 332
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 333 VVLLNAA 353
+L N A
Sbjct: 92 TILYNNA 98
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/45 (20%), Positives = 21/45 (46%)
Frame = +1
Query: 400 TAPVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSXMHNSDEMD 534
T V W+ + + ++ +P D Q C K+ S ++ +++
Sbjct: 116 TGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKWASWTYDGYQLE 160
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 33.9 bits (74), Expect = 0.002
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 463 NWPNDMQTCTFKFGSXMHNSDEMDFVIDXRIYSM 564
+WP D C FGS +H+ +E++ +D + + M
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHM 208
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 32.3 bits (70), Expect = 0.006
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +3
Query: 90 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 254
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 255 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 347
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Score = 26.6 bits (56), Expect = 0.29
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 424 RLDISTPISMQLDNWPNDMQTCTFKFGS 507
RL I M+L N+P D Q+C GS
Sbjct: 155 RLTIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 31.1 bits (67), Expect = 0.014
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +3
Query: 81 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 248
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 249 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLN 347
D RL++ G T V SE +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.9 bits (64), Expect = 0.031
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +3
Query: 81 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 248
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 249 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLN 347
D RL++ G T V SE +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 29.1 bits (62), Expect = 0.055
Identities = 9/42 (21%), Positives = 24/42 (57%)
Frame = +1
Query: 415 WIKRLDISTPISMQLDNWPNDMQTCTFKFGSXMHNSDEMDFV 540
++ +L + +M+ +++P+D Q C+ S H + ++ F+
Sbjct: 122 YMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVFI 163
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 29.1 bits (62), Expect = 0.055
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 409 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSXMHNSDEMDFVID 546
+ ++ +L + +M +P+D Q C + S H +DEM F D
Sbjct: 151 ILYMVKLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQWD 196
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 26.6 bits (56), Expect = 0.29
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 424 RLDISTPISMQLDNWPNDMQTCTFKFGSXMHNSDEM 531
RL + ++L+ +P D+Q C F S HN +M
Sbjct: 135 RLQATLNCGLRLEKFPFDVQECPLIFESWTHNVLDM 170
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 299 PSAAAPFPCVPTQS 258
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,046
Number of Sequences: 438
Number of extensions: 4931
Number of successful extensions: 77
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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