Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_I09
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       36   0.039
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    31   0.84 
07_03_1136 + 24218601-24218734,24218769-24219906                       31   1.5  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.6  
09_03_0145 - 12749288-12751510                                         29   4.5  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   5.9  
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132...    29   5.9  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 19/54 (35%), Positives = 20/54 (37%)
 Frame = +2

Query: 557 PXXPLKNPXXXXXXXPPXGEXXPPXXFXGGXRGXXPPPXXGGGXXNXPPXXXXP 718
           P  P K P       PP G   PP    GG +G  PPP   GG    P     P
Sbjct: 346 PPPPAKGPPPPP---PPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 682  PPXXXGGXXPPGPPXKXXGGXXFPPXGXXXP 590
            PP   GG  PP PP +  GG   PP     P
Sbjct: 1175 PPNAHGGVAPPPPPPRGHGGVGGPPTPPGAP 1205



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/73 (31%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
 Frame = +2

Query: 518  RENXXVXXXGXXXPXXPLKNPXXXXXXXPPX-----GEXXPPXXFXGGXRGXXPPPXXGG 682
            REN  V   G   P  P   P        P          PP    GG  G  PPP  GG
Sbjct: 1070 RENTSVGIQGGIPPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGG 1129

Query: 683  -GXXNXPPXXXXP 718
             G    PP    P
Sbjct: 1130 LGGHQAPPAPPLP 1142


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -3

Query: 720 GGXXXXGGXXXXPPPXXGGGXXPRXPPXXXXGGXFSP 610
           G     GG    PP   GGG  P  PP    GG   P
Sbjct: 96  GAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARP 132



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = -1

Query: 722 GGGXXXXGGXXPXPPXXXGGXXXPGXPXKXXGGGXFPP 609
           GG     GG    PP   GG   P  P    GGG   P
Sbjct: 95  GGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARP 132


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 385 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 284
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>09_03_0145 - 12749288-12751510
          Length = 740

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 602 PPXGEXXPPXXFXGGXRGXXPPPXXGG 682
           PP G   PP    G   G  PPP  GG
Sbjct: 35  PPPGIQPPPPALPGMPHGRPPPPFPGG 61


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/55 (29%), Positives = 16/55 (29%)
 Frame = +2

Query: 557 PXXPLKNPXXXXXXXPPXGEXXPPXXFXGGXRGXXPPPXXGGGXXNXPPXXXXPP 721
           P  P   P       P  G   PP     G  G  PP   GG     PP     P
Sbjct: 351 PPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPPPFKKSP 405


>03_01_0164 -
           1326002-1326409,1326410-1326428,1326523-1326647,
           1327482-1327530,1328834-1328855,1328969-1329071
          Length = 241

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +1

Query: 604 PXGGKXPPPXXXWGXPGXXSPPXXXGGXGXXPPXXXXPPP 723
           P GG  P P    G P    PP      G  PP    PPP
Sbjct: 185 PYGGYPPAPPAQ-GYPPAAYPPAGYPQGGAYPPPGSYPPP 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,525,521
Number of Sequences: 37544
Number of extensions: 384123
Number of successful extensions: 1176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)