Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_I08
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.44 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    26   5.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
 Frame = +1

Query: 376 PPPPPXXKKXXXXPFXXXXXXXXP----PPPXXXXXXXXGGGPPPP 501
           PPPPP        P         P    PPP        G GPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 411 PPXFXGXXXXPPPPPXXXGXXXXXGGXPPP 500
           P    G    PPPPP   G        PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
 Frame = +1

Query: 361 KXXXXPPPPPXXKKXXXXPF-XXXXXXXXPPPPXXXXXXXXGGGPPPP 501
           K    PPPPP  +     P          PPPP        G  P PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +3

Query: 360 KKXXXSPPPXXXKKXXXPPXFXGXXXXPPPPPXXXGXXXXXGGXPPP 500
           KK    PPP   +    PP   G      PPP         G  P P
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/42 (28%), Positives = 13/42 (30%)
 Frame = +1

Query: 376 PPPPPXXKKXXXXPFXXXXXXXXPPPPXXXXXXXXGGGPPPP 501
           PPPPP  +                PPP         G  PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 190 NRQNWEDADXPILCQTFL 243
           N+Q WED + P +C+  L
Sbjct: 10  NKQEWEDVEFPSICERCL 27


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 375 SPPPXXXKKXXXPPXFXGXXXXPPPPP 455
           S PP        PP F      PPPPP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,981
Number of Sequences: 5004
Number of extensions: 32765
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)