Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_I05
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0696 + 23617687-23617851,23618838-23619536                       33   0.36 
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    32   0.47 
07_03_1747 + 29188568-29188715,29188793-29189541                       31   1.4  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    30   1.9  
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773...    30   2.5  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   3.3  
09_04_0471 - 17878271-17878906,17880373-17880564,17880761-17881015     29   5.8  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   7.7  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   7.7  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    28   7.7  

>06_03_0696 + 23617687-23617851,23618838-23619536
          Length = 287

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 471 CS*TIGPTTCRL-ARSSSVL-GCTIVTKWISVIDKRIYSMFESGAWDVTDLSXAVXSPEP 644
           C+ T GP  CRL A +SSVL   ++ + W++  D    S++E  AW   +    +    P
Sbjct: 19  CTATGGPPHCRLTAEASSVLPNMSVASPWVNDDDLTEISIYEVIAWSAEEAMELIKQTPP 78


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 325 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 161
           H P AAA  P VP++    P  L +     GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 378 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 530
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 223 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 339
           V+ H  +  R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>02_03_0407 -
           18675368-18675378,18676047-18676977,18677323-18677376,
           18677809-18678039,18678112-18678319,18678405-18678433,
           18678638-18678706,18678832-18678893,18679056-18679133,
           18679243-18679315,18681135-18681260
          Length = 623

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 25/76 (32%), Positives = 30/76 (39%)
 Frame = -3

Query: 750 PPANXXPGXPGGXAGXAXSGKDIWDXXPXRASTSPPVXGXAXXWTDPSHPTLLTRTYCIF 571
           PPAN  P  P G  G   SG  +    P  A  SP     A     P  P  L R+Y I 
Sbjct: 509 PPANVDPVRPSGLVG--YSGPLVSKRAPTPARASPKASRTASPL--PRPPAALARSYSIP 564

Query: 570 FCQSRKSISSLLCILE 523
               R  I ++  +LE
Sbjct: 565 SNSQRTPIITVNKLLE 580


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 238 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 149
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>09_04_0471 - 17878271-17878906,17880373-17880564,17880761-17881015
          Length = 360

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +2

Query: 602 GCDGSVXCXAXPXTGGEVEARXGXWSQMSF 691
           GCDGSV   A P   GE EA     S  SF
Sbjct: 86  GCDGSVLMDATPTMAGEKEALSNINSLRSF 115


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 110 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 265
           +L   +D L+  YD+  PPDS+ V        HA      + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 407 GRGERSPRRWLQPRLAVPRQASTSVPRTP 321
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 352 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 185
           ++PP     H   + AP P +P+ S   P++  +   PH        S +QM  Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,474,248
Number of Sequences: 37544
Number of extensions: 592384
Number of successful extensions: 1649
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)