Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_I02
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    30   0.43 
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    25   9.3  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   9.3  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 139 SRYAKISSAVNGNVKKGVVFATYSSLIG 222
           S Y K  S VN N+  G +F  Y++++G
Sbjct: 781 SLYTKAKSTVNANIVAGTLFRNYTTILG 808


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 27  VGSEPYGCPVSNDLKYDAERDLRDIGAGKIEVYPLNK 137
           +G+   GC +  DL     RDL  I    I++  LN+
Sbjct: 50  IGAGGLGCEILKDLALSGFRDLSVIDMDTIDITNLNR 86


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 343  PVGSGKATKTGLTALELQNKLPKARVVY 426
            P GSGK     L      +  PK++VVY
Sbjct: 1158 PTGSGKTMAAELATWRALHNYPKSKVVY 1185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,043
Number of Sequences: 5004
Number of extensions: 32496
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)