Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_I02
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...   241   3e-64
Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical p...    29   3.8  
U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   8.7  

>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score =  241 bits (591), Expect = 3e-64
 Identities = 113/163 (69%), Positives = 131/163 (80%), Gaps = 1/163 (0%)
 Frame = +1

Query: 142 RYAKISSAVNGNVKKGVVFATYSSLIGET-ASNNTKYRSRLKQLLQWCGEDFDGVIVFDE 318
           +YAKIS   NG++KKGV+FATY+SLIGE   + + KYRSR+ QL+QW G+D+DGVI+ DE
Sbjct: 359 KYAKISGKENGSIKKGVMFATYTSLIGECRGAKSRKYRSRISQLIQWFGQDYDGVIILDE 418

Query: 319 CHKAKNLCPVGSGKATKTGLTALELQNKLPKARVVYASATGASEPRNMAYMVRLGIWGEG 498
           CH+AKNL P    K TKTG   LELQ  LP ARVVYASATGA+EPRNMAYM RLG+WGE 
Sbjct: 419 CHRAKNLVPTAGAKPTKTGRMVLELQKALPNARVVYASATGATEPRNMAYMTRLGLWGER 478

Query: 499 TPFPTFMDFINAVEXRGVGAMEIVAMDMKLRGMYIARQLSFHG 627
             FP F DFI+AVE RGVGAMEIVAMDMK RG+Y+ARQLSF G
Sbjct: 479 QAFPEFHDFISAVERRGVGAMEIVAMDMKQRGLYLARQLSFRG 521



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 22/30 (73%), Positives = 24/30 (80%)
 Frame = +3

Query: 54  VSNDLKYDAERDLRDIGAGKIEVYPLNKFK 143
           VS+DLK+DAERDLRD GA  I VY LNK K
Sbjct: 330 VSSDLKFDAERDLRDCGAPNIPVYALNKMK 359



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +2

Query: 11  ENYIKGRKRAIWVS 52
           ENY++GRKRAIW+S
Sbjct: 316 ENYLQGRKRAIWLS 329



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 626 GVSFRIEEVPLSDXFKETYXXXVXLWV 706
           GVSF ++EV LS  F + Y   V LW+
Sbjct: 521 GVSFAVQEVQLSSEFVKMYDAAVKLWM 547


>Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical
           protein C16C10.12 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 127 LSISSRYAKISSAVNGNVKKGVVFATYSSLIGETASNNTKYRSRLKQLLQWCGEDFDGVI 306
           L ++  +   S A+   V    +FA  S L G T  NN     R  Q   WC   F+G++
Sbjct: 492 LFLACLFETTSLAIAFAVPASGLFALLSGLYGNT--NNFPVYIRWMQWTSWCRYGFEGLV 549

Query: 307 V 309
           V
Sbjct: 550 V 550


>U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical
           protein B0495.2 protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 654 GTSSMRKDTPVEGQLARYVHPAQLHVHR-HYLHGAHASXLHGVNEVHKGR 508
           G  + +KD   +G+  R     ++H HR H+ H  H +  H  N  ++ R
Sbjct: 106 GPDARQKDRDFKGRQERSGRDQKVHEHRHHHHHRKHETDGHRTNRSNRDR 155


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 309  IRRVSQGKEPLPRRLREGDED 371
            +R V Q  EPL RRL E D+D
Sbjct: 2509 VRHVEQNPEPLARRLFEEDDD 2529


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,132,476
Number of Sequences: 27780
Number of extensions: 194197
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)