Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_I01
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.0  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    26   9.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
 Frame = +2

Query: 164 APVERXPAYTVPMXPPXXVXXXXP---XXXXPYPPXXPXFPXXLPXPPXXPP 310
           +P    PA  VP   P  +    P       P PP  P      P PP  PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 454  SPPXXXXXLPPPPXXXLXPPP 516
            +PP      PPPP   + PPP
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPP 1718


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 211 GGXHRDRVRXTSFNRCQGGTDHCIRLQ 131
           GG H+ R+R   F R   G    IR++
Sbjct: 63  GGGHKQRIRLVDFERKVPGVHRVIRIE 89


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 639  TPPPXPXXTQTPLXXXLXSXXHPSPPPXXHP 731
            T PP P  T TP      S    +PPP   P
Sbjct: 1039 TAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,129
Number of Sequences: 5004
Number of extensions: 23548
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)