Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_I01
         (976 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   1.2  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.8  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/53 (28%), Positives = 18/53 (33%)
 Frame = +2

Query: 137 PNTVIRAALAPVERXPAYTVPMXPPXXVXXXXPXXXXPYPPXXPXFPXXLPXP 295
           P   + A   P    P + VP   P       P     YPP  P +P   P P
Sbjct: 103 PQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAP 155



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
 Frame = +3

Query: 603 PXPXXPRXIXX*TPPPXPXXTQT-PLXXXLXSXXHPSPPPXXHPXXSPXFXXXP 761
           P P     +    PPP P      P          P PPP  +P   P +   P
Sbjct: 99  PAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPP 152


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/52 (26%), Positives = 18/52 (34%)
 Frame = +1

Query: 709 PPPXXFIPXXXRXFXSXXPPPXPXKXLXXPFSXAPIXSXLSPXQXAXTPXXP 864
           PPP  F P   R      PP    + +  PF   P    + P +    P  P
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHP 341


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/52 (26%), Positives = 18/52 (34%)
 Frame = +1

Query: 709 PPPXXFIPXXXRXFXSXXPPPXPXKXLXXPFSXAPIXSXLSPXQXAXTPXXP 864
           PPP  F P   R      PP    + +  PF   P    + P +    P  P
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHP 341


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 206 PPXXVXXXXPXXXXPYPPXXPXFPXXLPXPPXXPP 310
           PP  +          YPP  P  P   P PP  PP
Sbjct: 245 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPP 279


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 206 PPXXVXXXXPXXXXPYPPXXPXFPXXLPXPPXXPP 310
           PP  +          YPP  P  P   P PP  PP
Sbjct: 255 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPP 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,445,527
Number of Sequences: 27780
Number of extensions: 195769
Number of successful extensions: 1037
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)