Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_H24
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 177 9e-45
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 175 5e-44
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.16
03_05_0366 - 23505755-23506441 31 0.86
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.6
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.6
12_02_0466 + 19403855-19404347,19404359-19404582,19404659-194050... 29 6.0
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 6.0
04_01_0588 + 7657510-7657992,7658397-7658843 29 6.0
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.0
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 177 bits (431), Expect = 9e-45
Identities = 81/132 (61%), Positives = 93/132 (70%)
Frame = +2
Query: 179 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 358
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 359 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 538
+GQGAFGNMCRGGRMFAPTK WR+WH ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 539 IPELPLVVADKS 574
+PELPLV++D +
Sbjct: 151 VPELPLVISDSA 162
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/63 (41%), Positives = 37/63 (58%)
Frame = +3
Query: 531 LKRFPSFPWL*PTKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 710
++ P P + + I KT QA+ L+++ A++D K S +R GKGKMRNRR I
Sbjct: 148 IETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYIN 207
Query: 711 RKG 719
RKG
Sbjct: 208 RKG 210
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 175 bits (425), Expect = 5e-44
Identities = 82/133 (61%), Positives = 91/133 (68%)
Frame = +2
Query: 170 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 349
+P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 27 MPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGG 86
Query: 350 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 529
THR+GQGAFGNMCRGGRMFAPTK WRRWH ARGH
Sbjct: 87 THRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHR 146
Query: 530 IEKIPELPLVVAD 568
IE +PE PLVV+D
Sbjct: 147 IEGVPEFPLVVSD 159
Score = 57.2 bits (132), Expect = 2e-08
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = +3
Query: 543 PSFPWL*PTKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 719
P FP + ++ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I RKG
Sbjct: 151 PEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKG 209
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 290 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 400
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.5 bits (68), Expect = 0.86
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 134 QRRVGRCRVQPPLP---FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESW 301
QR+ G + P P ++ AP D +V S + R P C S E + +AES
Sbjct: 91 QRQGGSGWERHPWPHDSWIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESG 150
Query: 302 GTGRAVARIPRVRGGGTHRSGQGA 373
TG A R R+ G T+ + + A
Sbjct: 151 ATGLAHTRAGRIHAGPTNDNDEEA 174
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 395 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 288
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -1
Query: 368 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 267
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -1
Query: 365 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 267
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>12_02_0466 +
19403855-19404347,19404359-19404582,19404659-19405093,
19405180-19406024,19406353-19406635,19406903-19406977
Length = 784
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -2
Query: 658 DLYTLRISDHALRRLRKMTACLVLLIS--WTFVGY-NQGKLGNLFN--NVSSSLNERWDA 494
DLY +R D L + + ++L+I+ W+ V Y N +++ + S+LNE WD
Sbjct: 649 DLYRVRAIDTNLLKCYSLRHWILLVITPKWSLVHYLNSNIKPEIYDWSAIESALNEAWDQ 708
Query: 493 GSSNGCR 473
+ G R
Sbjct: 709 YVARGGR 715
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 532 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 425
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 212 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 382
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 383 MCRGGRMFAPTKPWRRW 433
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 275 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 379
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,065,272
Number of Sequences: 37544
Number of extensions: 544989
Number of successful extensions: 2038
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2029
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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