Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_H23
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 281 1e-76
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 280 2e-76
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 30 0.48
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 28 1.5
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.4
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 27 4.5
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 5.9
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 26 7.8
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 281 bits (688), Expect = 1e-76
Identities = 124/200 (62%), Positives = 159/200 (79%)
Frame = +1
Query: 85 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 264
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 265 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWVEHMSEDCRRRFYKNWYXX 444
K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVW EH+SE+ +RRFYKNW+
Sbjct: 66 KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125
Query: 445 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 624
+ + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183
Query: 625 NGGTIEDKVKWAREHLEKPI 684
NGG++ DKV+WAREH EK +
Sbjct: 184 NGGSVADKVEWAREHFEKTV 203
Score = 60.1 bits (139), Expect = 4e-10
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +2
Query: 704 QDEMIDCIXXXXXXXXXXXXSRWHTKKLPR*THKGLXKVACIGTWHPS 847
Q+EMID I +RW TK+LPR TH+GL KVACIG WHP+
Sbjct: 211 QNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPA 258
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 280 bits (687), Expect = 2e-76
Identities = 123/200 (61%), Positives = 159/200 (79%)
Frame = +1
Query: 85 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 264
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 265 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWVEHMSEDCRRRFYKNWYXX 444
K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVW EH+SE+ +RRFYKNW+
Sbjct: 66 KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125
Query: 445 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 624
+ + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183
Query: 625 NGGTIEDKVKWAREHLEKPI 684
NGG++ DKV+WAREH EK +
Sbjct: 184 NGGSVADKVEWAREHFEKTV 203
Score = 60.1 bits (139), Expect = 4e-10
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +2
Query: 704 QDEMIDCIXXXXXXXXXXXXSRWHTKKLPR*THKGLXKVACIGTWHPS 847
Q+EMID I +RW TK+LPR TH+GL KVACIG WHP+
Sbjct: 211 QNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPA 258
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 29.9 bits (64), Expect = 0.48
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 637 IEDKVKWAREHLEKPILSILCLP 705
IE + WA+E+++K S+LCLP
Sbjct: 336 IEQTITWAKEYIKKAKDSLLCLP 358
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 43 ILVCDCLPACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYK 219
IL + P C H + S +P + G K FP D+P S P+ + G
Sbjct: 284 ILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGED 343
Query: 220 AGMTHVVREPDRPGSKI 270
T ++ P++ +I
Sbjct: 344 VNFTVALKVPEKSNKEI 360
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 73 RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 192
++E QHP +M FY + + G FP++ KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 246 FSNHVGHPGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIF 79
F N VG G+I D S + +R+VF D +G L ++SH +P V IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 538 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 648
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 561 PHSNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQRTSGETYPVDSVFAKMK 713
P +N+++ T++ YGNP+ H G ++ + + VDS F K
Sbjct: 164 PKANDSLSTSSVP--EYGNPSKIRKHEGSLDIKDDRNCDIIDVDSAFENFK 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,525
Number of Sequences: 5004
Number of extensions: 72235
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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