Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_H23
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 267 9e-72
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 264 6e-71
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.2
05_04_0324 - 20273797-20274261 29 4.7
02_05_0600 - 30273080-30274692,30274709-30274949 29 6.2
08_02_1628 + 28363476-28363517,28363624-28363791,28363863-283639... 28 8.2
07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976 28 8.2
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 267 bits (654), Expect = 9e-72
Identities = 119/201 (59%), Positives = 154/201 (76%), Gaps = 1/201 (0%)
Frame = +1
Query: 85 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 264
F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 265 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWVEHMSEDCRRRFYKNWYXX 444
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VW +H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 445 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 621
+ + G+K I+ +KM +Y S+VRVIAHTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185
Query: 622 LNGGTIEDKVKWAREHLEKPI 684
+NGGTI DKV + + EK I
Sbjct: 186 INGGTIADKVDYGYKFFEKEI 206
Score = 58.0 bits (134), Expect = 9e-09
Identities = 25/49 (51%), Positives = 30/49 (61%)
Frame = +2
Query: 704 QDEMIDCIXXXXXXXXXXXXSRWHTKKLPR*THKGLXKVACIGTWHPSR 850
+DEMID I +RW +LPR TH+GL KVACIG WHP+R
Sbjct: 214 KDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPAR 262
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 264 bits (647), Expect = 6e-71
Identities = 118/201 (58%), Positives = 153/201 (76%), Gaps = 1/201 (0%)
Frame = +1
Query: 85 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 264
F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 265 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWVEHMSEDCRRRFYKNWYXX 444
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VW +H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 445 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 621
+ + G+K I+ +KM +Y SVVRVI HTQ++ +K +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185
Query: 622 LNGGTIEDKVKWAREHLEKPI 684
+NGGTI DKV + + EK I
Sbjct: 186 INGGTIADKVDYGYKFFEKEI 206
Score = 58.0 bits (134), Expect = 9e-09
Identities = 25/49 (51%), Positives = 30/49 (61%)
Frame = +2
Query: 704 QDEMIDCIXXXXXXXXXXXXSRWHTKKLPR*THKGLXKVACIGTWHPSR 850
+DEMID I +RW +LPR TH+GL KVACIG WHP+R
Sbjct: 214 KDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPAR 262
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 504 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 620
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 163 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 336
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 337 VGYIETPHGLRAL 375
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 374 F*LSGWSICLKTVDVASTKTGTNARRRLSLKPVR 475
F L GW +C + S+ TG RRRL P R
Sbjct: 255 FRLHGWPLCRRCWASTSSPTGRLDRRRLVFPPAR 288
>08_02_1628 +
28363476-28363517,28363624-28363791,28363863-28363937,
28364018-28364070,28364559-28364709,28365079-28365261,
28366110-28366236,28366731-28366831,28367156-28367294,
28367359-28367420,28367702-28367754,28368266-28368290
Length = 392
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 339 NNTDTNHRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHPGLITDKSSQMNRFA 181
+ DT+H ++G+S +VD T T + G+P ++ ++ +Q N FA
Sbjct: 87 DGVDTSHILVAEEGNSPFTYIIVDNQTKTRTCIHTPGYPPMVPEELTQENLFA 139
>07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976
Length = 562
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 459 ESLLLAFVPVFVEATSTVFRHMLHPDSQKSA*SMRGLNVSNNTDTNHRRSLDDGDSLH 286
E LL+ P ++ T V LH +QK+ M + + + D HRR+ +LH
Sbjct: 202 EILLMKTAPGLIDLTDAVGNTALHFAAQKNDKRMVRMLLDHKPDLAHRRNERQQSALH 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,844,147
Number of Sequences: 37544
Number of extensions: 505694
Number of successful extensions: 1143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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