Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_H18
         (985 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.012
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   0.038
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.19 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   5.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   5.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.5 bits (78), Expect = 0.012
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 845 PPPXGXGXXXPPPPPPPP 792
           PPP G     PPPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 34.3 bits (75), Expect = 0.027
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 845 PPPXGXGXXXPPPPPPPP 792
           PPP   G   PPPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 842 PPXGXGXXXPPPPPPPP 792
           PP       PPPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 845 PPPXGXGXXXPPPPPPP 795
           PPP       PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 845 PPPXGXGXXXPPPPPPPP 792
           PPP   G     PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect(2) = 0.038
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 827 GXXXPPPPPPPP 792
           G   PPPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 827 GXXXPPPPPPPPXXF 783
           G   PPPPPPP   F
Sbjct: 304 GLPPPPPPPPPSNDF 318



 Score = 24.6 bits (51), Expect(2) = 0.038
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 812 PPPPPPPXXFXXFY 771
           PPPPPPP     F+
Sbjct: 306 PPPPPPPPPSNDFW 319


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 845 PPPXGXGXXXPPPPPPPP 792
           PPP G      PPPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 845 PPPXGXGXXXPPPPPPPP 792
           PPP   G   P  PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 815 PPPPPPPP 792
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 25.4 bits (53), Expect(2) = 0.78
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 812 PPPPPPPXXF 783
           PPPPPPP  F
Sbjct: 9   PPPPPPPPGF 18



 Score = 22.2 bits (45), Expect(2) = 0.78
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 827 GXXXPPPPPP 798
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 815 PPPPPPPP 792
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 815 PPPPPPPP 792
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 23.8 bits (49), Expect(2) = 3.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 815 PPPPPPP 795
           PPPPPPP
Sbjct: 238 PPPPPPP 244



 Score = 21.4 bits (43), Expect(2) = 3.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -3

Query: 839 PXGXGXXXPPPPPP 798
           P       PPPPPP
Sbjct: 184 PSDYNPPPPPPPPP 197


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 792 GGGGGGGGXXXPXPXGGGG 848
           GG GGG G   P P G GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGG 209


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = -3

Query: 842 PPXGXGXXXP--PPPPPPP 792
           PP G G      PPPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 815  PPPPPPPP 792
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 815 PPPPPPPP 792
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 815 PPPPPPPP 792
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 815 PPPPPPPP 792
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,834
Number of Sequences: 5004
Number of extensions: 11703
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)