Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_H16
         (1070 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    37   0.006
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.052
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.48 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.6  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   3.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   5.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +2

Query: 782 PPPPPPFXXXXGGG--GGGGXXXXXPPPPPPP 871
           PPPPPP     G    G G      PPPPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 9/54 (16%)
 Frame = +1

Query: 736 PPPXKKKKKXXGPPXX---------PPPPPFXXXXGGGGGGGXXXXXPPPPPPP 870
           PPP   ++    PP           PPPPP      G           PPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 861 GGGGXXXXXPPPPPPPXXXXKG 796
           G G      PPPPPPP     G
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAG 349



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 860 GGGGXXXXXPPPPPPPXXXXKG 795
           G G      PPPPPPP     G
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAG 349



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 782 PPPPPPFXXXXGGGGGGGXXXXXPPPPPPP 871
           PP PPP                 PPPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKR--PPPPPPP 317



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/46 (30%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
 Frame = +1

Query: 736 PPPXKKKKKXXGPPXXPPPPPFXXXXG-GGGGGGXXXXXPPPPPPP 870
           PPP    +    PP  PP  P          G       PP P PP
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.052
 Identities = 19/45 (42%), Positives = 19/45 (42%)
 Frame = +1

Query: 736 PPPXKKKKKXXGPPXXPPPPPFXXXXGGGGGGGXXXXXPPPPPPP 870
           P P        G P  PPPPP     G  G G      PPPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP-----GVAGAG----PPPPPPPPP 783



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = +1

Query: 736 PPPXKKKKKXXGPPXXPPPPPFXXXXGGGGGGGXXXXXPPPPPPP 870
           PPP        GPP  PPPPP        GG       P   P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAV----SAGGSRYYAPAPQAEPEP 803



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +3

Query: 729 GXPPPXXKKKKXXXXPXXPPPPPLXXXXXGGGGGGXXXXXPPPPPPP 869
           G PPP          P  PPPPP        GG       P   P P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPP---PAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 852 GXXXXXPPPPPPPXXXXKGGG 790
           G     PPPPPPP      GG
Sbjct: 769 GVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 851 GXXXXXPPPPPPPXXXXKGGG 789
           G     PPPPPPP      GG
Sbjct: 769 GVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = +1

Query: 736 PPPXKKKKKXXGPPXXPPPPPFXXXXGGGGGGGXXXXXPPPPPPP 870
           PPP         P   P PPP     G           PPPPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGG-----------PPPPPPP 767



 Score = 23.8 bits (49), Expect(2) = 5.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 831 PPPPPPXXXXKGGG 790
           PPPPPP     G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 21.0 bits (42), Expect(2) = 5.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 834 PPPPPP 817
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +2

Query: 773 PXXPPPPPPFXXXXGGGGGGGXXXXXPPPPPPP 871
           P  PPPPPP          G      PPPPPPP
Sbjct: 6   PGNPPPPPP--------PPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 736  PPPXKKKKKXXGPPXXPPPP 795
            PPP        GPP  PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 782  PPPPPPFXXXXGGGGGGGXXXXXPPPPPP 868
            PPPPPP      G          PP  PP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPP 1910


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 852  GXXXXXPPPPPPPXXXXKGGGG 787
            G     PPPPPPP       GG
Sbjct: 939  GVMPAFPPPPPPPPPLVSAAGG 960



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 851  GXXXXXPPPPPPPXXXXKGGGG 786
            G     PPPPPPP       GG
Sbjct: 939  GVMPAFPPPPPPPPPLVSAAGG 960



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 773 PXXPPPPPPFXXXXGG 820
           P  PPPPPP     GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 24.2 bits (50), Expect(2) = 2.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 831 GXXXXXPPPPPPP 869
           G     PPPPPPP
Sbjct: 939 GVMPAFPPPPPPP 951



 Score = 21.8 bits (44), Expect(2) = 2.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 774 PXXPPPPPL 800
           P  PPPPPL
Sbjct: 905 PTPPPPPPL 913


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 737 PPXXKKKKXXXXPXXPPPPPP 799
           PP    K+    P  PPPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPP 244


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 736 PPPXKKKKKXXGPPXXPPP 792
           PP  + KK   GPP  PPP
Sbjct: 214 PPKFRHKKVPRGPPSPPPP 232


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.8 bits (49), Expect(2) = 5.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 851 PPPPPPP 871
           PPPPPPP
Sbjct: 371 PPPPPPP 377



 Score = 21.0 bits (42), Expect(2) = 5.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 782 PPPPPP 799
           PPPPPP
Sbjct: 370 PPPPPP 375


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 867 GGGGGGXXXXXPPPPPPPXXXXKGGGGGG 781
           GGG GG       PPP P      GG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 870 GGGGGGGXXXXXPPPPPPPXXXXKGGGGG 784
           GGG GG       PPP P      GG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.153    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,495
Number of Sequences: 5004
Number of extensions: 42863
Number of successful extensions: 548
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 561795324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)