Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_H14
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 2.9
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 2.9
Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical pr... 29 3.9
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 5.1
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 5.1
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 5.1
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 5.1
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr... 28 9.0
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr... 28 9.0
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 450 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 581
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 450 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 581
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical
protein T10H4.10 protein.
Length = 504
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 295 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 435
D +L R G +G IF VR RF++ R D++ PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 250 LTR*NEHNARTSTRPGTGRIRFPSKPDT 167
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 250 LTR*NEHNARTSTRPGTGRIRFPSKPDT 167
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 250 LTR*NEHNARTSTRPGTGRIRFPSKPDT 167
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 250 LTR*NEHNARTSTRPGTGRIRFPSKPDT 167
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
protein C25H3.8 protein.
Length = 2148
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 233 T*RTNIDQTRHRPHPLPVQT 174
T +++ID T H PHP+ VQT
Sbjct: 904 TLKSSIDITNHLPHPIAVQT 923
>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
protein F40F12.5 protein.
Length = 1144
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -2
Query: 149 NPYSEVTGSNLPTSLT-----YIILSTRGSSPWRPAADMGTNRRDISTYIP 12
NP E+TGSN T+LT Y S + S+ + +NR +++ IP
Sbjct: 20 NPLDELTGSNTITNLTAHDFDYFTQSEKNSNLYTSENTSNSNRLNLNQNIP 70
>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
ZK1193.2 protein.
Length = 1250
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 143 YSEVTGSNLPTSLTYIILSTRGSSPWRPA 57
Y+ + G+N+ + + YI+L S+P+RPA
Sbjct: 1131 YTGINGNNIQSVMDYIVLQ-NNSAPFRPA 1158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578,533
Number of Sequences: 27780
Number of extensions: 365718
Number of successful extensions: 973
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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