Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_H13
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.35 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.46 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.2  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   9.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 242 VRVHRANTGRSSNELDRQTTELERR 316
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
 Frame = +1

Query: 607 PPGSXXPXSXXXXXPX-PXRAPPPAXXGAGXXXXPRXPPQSPXXGXXPXGXXPRRPRPXA 783
           PP    P       P  P  APP    GA     P  PP +P     P G     P P A
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGA--PAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472

Query: 784 --XXPXGXGPXPXXP 822
               P    P P  P
Sbjct: 473 APAPPPAPAPAPAAP 487



 Score = 25.4 bits (53), Expect = 9.8
 Identities = 19/71 (26%), Positives = 19/71 (26%), Gaps = 4/71 (5%)
 Frame = +1

Query: 607 PPG-SXXPXSXXXXXPXPXRAPPPAXXGAGXXXXPRXPPQSP---XXGXXPXGXXPRRPR 774
           P G S  P       P   R PPP          P  PP  P        P G   R   
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTST 414

Query: 775 PXAXXPXGXGP 807
           P    P    P
Sbjct: 415 PPVPTPPSLPP 425


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/71 (26%), Positives = 21/71 (29%)
 Frame = +1

Query: 610  PGSXXPXSXXXXXPXPXRAPPPAXXGAGXXXXPRXPPQSPXXGXXPXGXXPRRPRPXAXX 789
            P    P +     P P  APP      G    P  PP +      P    P  P P A  
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP--PPSTAPPVPTPSAGLPPVPVPTAKA 1236

Query: 790  PXGXGPXPXXP 822
            P    P    P
Sbjct: 1237 PPVPAPSSEAP 1247


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 166 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 68
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/65 (29%), Positives = 20/65 (30%)
 Frame = +1

Query: 604 APPGSXXPXSXXXXXPXPXRAPPPAXXGAGXXXXPRXPPQSPXXGXXPXGXXPRRPRPXA 783
           +PP            P P   PPPA    G       PP  P  G    G  P  P P A
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGG------PPPPPPPPGVAGAGPPPPPPPPPA 784

Query: 784 XXPXG 798
               G
Sbjct: 785 VSAGG 789



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
 Frame = +1

Query: 604 APPGSXXPXSXXXXXPXPXRAPPPAXXGAGXXXXPRXPPQSPXXGXXPXGXXPR-RPRP 777
           AP     P         P   PPP   GAG    P  PP     G       P+  P P
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 245 GLTNVSMSQMQGQVDYDFGVGGGVPIV--RCEERVDHE 138
           G ++ S+S ++ ++DY      G+P+V  +  E VD E
Sbjct: 11  GKSDTSVSSLECEIDYHIEGSDGIPVVEPKISEFVDME 48


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 715 PPQSPXXGXXPXGXXPRRPRPXAXXPXGXGPXP 813
           PP+SP  G    G  P    P        GP P
Sbjct: 708 PPRSPGTGSLAAGNLPNEKAPSLMTMVNGGPVP 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,278
Number of Sequences: 5004
Number of extensions: 42346
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)