Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_H10
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    28   2.1  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.7  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    27   3.7  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   6.5  

>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 482 YTGRGERSPRRWLQPRLAVPRQASTSVPED 393
           Y+GR  R  R   +PR++ P  +ST VP+D
Sbjct: 44  YSGRTRRRNRN-TRPRVSAPSSSSTVVPKD 72


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 214 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 116
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 431 AVPRQASTSVPEDTSQVLQPHSPCVPTQS 345
           +V R A+++V   +  +L  H+ CVP QS
Sbjct: 243 SVRRNANSTVKPTSKDILALHAECVPAQS 271


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -2

Query: 256 RLTTILESGGDSRSY---VARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRQTFY 89
           RLT  L SG +S      VA +E + R  D+  +H   L +     +GN      + FY
Sbjct: 44  RLTKGLSSGRESARIGFAVALTELLTRTKDIRATHVLDLLVKHNTASGNLKGQDERDFY 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,239
Number of Sequences: 5004
Number of extensions: 44968
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)