Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_H10
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730...    31   0.97 
04_04_0209 + 23607749-23607893,23607990-23608043,23608156-236084...    30   3.0  
06_03_1472 - 30377744-30378622                                         29   5.2  
10_07_0168 + 13758189-13758418,13758888-13759041,13760576-137610...    29   6.8  
05_01_0008 + 60498-60552,60644-60864,60956-61013,61271-61443,615...    29   6.8  
02_05_0423 - 28834380-28835852,28836987-28837109                       28   9.0  

>08_02_1476 -
           27372288-27372310,27372508-27372586,27372818-27373085,
           27373346-27373410,27373611-27373757
          Length = 193

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 476 GRGERSPRRWLQPRLAVPRQASTSVPEDTSQVLQ 375
           G   R PRRW + R  +P QA+T V    S +LQ
Sbjct: 27  GHRRRHPRRWTRVRDQLPTQATTKVVGKFSYILQ 60


>04_04_0209 +
           23607749-23607893,23607990-23608043,23608156-23608433,
           23609524-23609894,23610033-23610096,23610472-23610603
          Length = 347

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -2

Query: 412 PQAFPRTPAKCCSPIXPAFQLSRLSIQFI*RSASIRTKDSDSRMLACLKCRVRLTTILES 233
           P  +PRTP +  + I  A Q SRL I     +A  R++  +     C + R  L   +E 
Sbjct: 143 PDWYPRTPLRDITAIAKAIQRSRLRI----AAAQQRSQTPEQNTPHCTEVRDSLD--VEP 196

Query: 232 GGDSRSYVAR-SESIMRDSDVAFS 164
           G +S   VA  + S+ +DS   FS
Sbjct: 197 GINSTQIVATPASSLAKDSLKIFS 220


>06_03_1472 - 30377744-30378622
          Length = 292

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 521 PKRFIQEXEPLVRYTGRGERSPRR-WLQPRLAVPRQASTSVPEDTSQVLQPHSPCVPTQS 345
           PKR I   + LV Y GR  R  +  W+     +P  A  ++P DT Q+   H   V  + 
Sbjct: 119 PKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRLPDAA--AIP-DTMQLQMQHDDMVLCKV 175

Query: 344 FVDPIHLK 321
           +   + LK
Sbjct: 176 YRKAVSLK 183


>10_07_0168 +
           13758189-13758418,13758888-13759041,13760576-13761042,
           13761361-13761478,13761566-13761622,13761906-13762082,
           13762225-13762365,13762458-13762531,13764583-13764738,
           13764822-13764895,13764992-13765068
          Length = 574

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = -1

Query: 452 RWLQPRLAVPRQASTSVPEDTSQVLQPHSPCVPTQSFVDPIHLKICQYPHXG----LGLT 285
           +WL P     R   TSV E++ +       C+   S   P+   +C+    G    LG T
Sbjct: 463 QWLVPIAESTRSDQTSVHENSVKNQFDLGECIALTSCPCPVEYILCESKREGKAAILGKT 522

Query: 284 NVSMSQM 264
           N S+S M
Sbjct: 523 NKSLSAM 529


>05_01_0008 +
           60498-60552,60644-60864,60956-61013,61271-61443,
           61528-61711,61823-61993,62483-62514,62596-62638,
           62768-62835,63561-63605,63695-64162
          Length = 505

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 506 QEXEPLVRYTGRGERSPRRWLQPRLAVPRQASTSVPEDTSQVLQPHS 366
           +E  P V  +G  ERSP    Q R   P+     +PE  + + QP S
Sbjct: 408 EEARPSVYISGAEERSPPPPPQRRWVPPQPPGVVMPEAVAAIRQPKS 454


>02_05_0423 - 28834380-28835852,28836987-28837109
          Length = 531

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 305 ADTGRSSNELDRQTTELERRXNGAAALGWCPRERLWRPD 421
           AD G +    ++ T E  +  NGAA +G C  E    PD
Sbjct: 31  ADLGHADTGQEKPTVESAQPANGAAPMGECGTEYRGLPD 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,531,360
Number of Sequences: 37544
Number of extensions: 386593
Number of successful extensions: 888
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)