Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_H07
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    33   0.046
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    31   0.24 
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   5.3  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   7.0  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = +2

Query: 386 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 565
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +R ++   G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 566 GSALSPLL 589
           GS +SP+L
Sbjct: 424 GSIVSPIL 431


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 123 SAYTSRANRRTKPRVTAPSVSS 188
           S  T R NR T+PRV+APS SS
Sbjct: 45  SGRTRRRNRNTRPRVSAPSSSS 66


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 496 VRQVVSYDEHEPVWHSHV 443
           +R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 71  AAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLY 208
           +++ +C+   +W E  VI   +  K   E   Y P S+L   GK Y
Sbjct: 164 SSLPDCLDVTSWTENGVIMGARHKKYAIEGVQYHPESILSEYGKEY 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,115
Number of Sequences: 5004
Number of extensions: 69313
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)