Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_H07
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.34 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   1.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 395  KAFDKVWHNGLIYKLYNMGVPDRLVLIIRD 484
            KA+ KV  N +I+++Y MG  DR + +  D
Sbjct: 1542 KAYQKVEENEIIFEIYKMG--DRFIGLTSD 1569


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 481 SYDEHEPVWHSHV 443
           SYD  EP W +HV
Sbjct: 414 SYDAQEPAWKTHV 426


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 79  DELHLSRGVERSGRYRHTQAGQ 144
           D  H+ RG+E  G Y H +  +
Sbjct: 2   DSSHVVRGIEHGGLYYHQRCSR 23


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 601 ISTIYPGLRRPS 636
           + T+YPG+R PS
Sbjct: 108 LGTLYPGMRAPS 119


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 601 ISTIYPGLRRPS 636
           + T+YPG+R PS
Sbjct: 108 LGTLYPGMRAPS 119


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 112 SGRYRHTQAGQTEERNRELPPHQSPPGD 195
           S R  +   G+T+   RE+   QS P +
Sbjct: 381 SSRMENNLRGETQSNYREMEKRQSVPAN 408



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 103 RRGKDAVRHSSI*YGGQHRYQL 38
           R G  +VR SSI  GG  R Q+
Sbjct: 342 RTGLSSVRDSSIICGGNKRSQV 363


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = -2

Query: 428 SNRCARLYRTPSLYRRRG-----LLSEWVSACSAL 339
           S +  +LYR  SL +RRG     LLS ++   +AL
Sbjct: 29  SAKLEKLYRASSLQQRRGGLEYFLLSAFLFGANAL 63


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 178  QSPPGDRQTLRTAPS 222
            QSP   +QT++T PS
Sbjct: 1286 QSPGNQQQTIQTQPS 1300


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 531 PGPVTSQPESRKAPPS 578
           PG V   PE++  PPS
Sbjct: 287 PGEVDLPPETQPTPPS 302


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
 Frame = +1

Query: 166 LPPHQSPPGDRQTLRTAPS*T-PLGLRIRE*NSYRRAVWIPRQTLVRPSSAPPHGA---- 330
           +PP  + PG   T+ T PS   P+  RI + ++   A  +  +  VR   A         
Sbjct: 429 MPPLPNMPGSMPTMPTMPSMAGPIRRRISDKSALSLAGGLYDEGTVRRRVAVDRSGIDIN 488

Query: 331 -HLTRAEQAETHSDRSPLLRYSEGVR*SLAQRFDIQ 435
             + R  +   ++D  P   Y+  +R S+ +  D Q
Sbjct: 489 EEIQRNREFYKNADVRPPFTYASLIRQSIIESPDKQ 524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,209
Number of Sequences: 438
Number of extensions: 5939
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)