Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_H03
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    27   2.3  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   9.3  

>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 725 PFXTPX*TPAHVPL--LMXDNPTLGEFCFAMIGRADIEGSKSNV-AMNAWLPQASYPCGN 555
           PF     +P +VP   +   NP    F  AM+  A  EGS +N    N  +PQA+ P  N
Sbjct: 94  PFKLQCDSPYNVPPENMFNQNPDFANFFQAMLQSAK-EGSDTNFQGENEQIPQATAPLKN 152


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 353  ILMNLDNF-CRSHGQVPATHLSNVCLINFQRAKGQ 454
            +L NLDN        VPA+H S   ++NF   KG+
Sbjct: 1488 VLTNLDNKEVNLEDAVPASHRSASGIVNFDVEKGK 1522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,547
Number of Sequences: 5004
Number of extensions: 60577
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)