Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_H02
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   179   5e-46
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   178   6e-46
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   7.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.4  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   9.4  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.4  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  179 bits (435), Expect = 5e-46
 Identities = 86/154 (55%), Positives = 102/154 (66%)
 Frame = +3

Query: 96  LSVARPLXVGVFREE*DGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 275
           ++ ARP  V ++ ++      +     FVFKAPIRPDLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPT-VSIYNKD-GSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKA 58

Query: 276 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 455
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH      
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118

Query: 456 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPL 557
                               ARGH IE+IPE+PL
Sbjct: 119 EKRYAIASAVAASGVPSLLLARGHRIEEIPEVPL 152



 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 33/54 (61%), Positives = 44/54 (81%)
 Frame = +2

Query: 626 KAWSDILKVYKSXRLRAGKGKMRNRRRIQRKGXLXIFNKDQGLTRAFRXIPGVE 787
           KA+ D++KV  S +LRAGKGK+RNRR +QR+G L +FN+D G+ +AFR IPGVE
Sbjct: 175 KAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVE 228


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  178 bits (434), Expect = 6e-46
 Identities = 82/127 (64%), Positives = 91/127 (71%)
 Frame = +3

Query: 177 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 356
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 357 RSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 536
           RSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH IE
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIE 145

Query: 537 KIPELPL 557
           +IPE+PL
Sbjct: 146 EIPEVPL 152



 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 33/54 (61%), Positives = 44/54 (81%)
 Frame = +2

Query: 626 KAWSDILKVYKSXRLRAGKGKMRNRRRIQRKGXLXIFNKDQGLTRAFRXIPGVE 787
           KA+ D++KV  S +LRAGKGK+RNRR +QR+G L +FN+D G+ +AFR IPGVE
Sbjct: 175 KAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVE 228


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -1

Query: 114 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 37
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 532  LKRFPSFPWVVAD 570
            L ++P FPWV+AD
Sbjct: 1947 LTQYPVFPWVIAD 1959


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = -2

Query: 569 SATTQGKLGNLFNNVSSSLNE 507
           SAT+  +L ++F+N+SSS+++
Sbjct: 670 SATSNSQLSSIFSNLSSSISD 690


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 525 HIIEKIPELPLGCSRQSPRDQQDQTGCH 608
           H++EK+ E+ + C R       ++  CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,780
Number of Sequences: 5004
Number of extensions: 56553
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)