Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_H02
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 171 5e-43
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 167 9e-42
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.15
03_05_0366 - 23505755-23506441 33 0.35
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 32 0.60
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.4
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.4
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 5.6
04_01_0588 + 7657510-7657992,7658397-7658843 29 5.6
02_04_0457 + 23093020-23093343,23093798-23093806 29 5.6
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 9.8
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 28 9.8
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 9.8
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 171 bits (416), Expect = 5e-43
Identities = 79/126 (62%), Positives = 88/126 (69%)
Frame = +3
Query: 180 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 359
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 360 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 539
+GQGAFGNMCRGGRMFAPTK WR+WH ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 540 IPELPL 557
+PELPL
Sbjct: 151 VPELPL 156
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +2
Query: 629 AWSDILKVYKSXRLRAGKGKMRNRRRIQRKGXLXIFNKD-QGLTRAFRXIPGVE 787
A++D K S +R GKGKMRNRR I RKG L ++ + + +AFR +PGV+
Sbjct: 180 AYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVD 233
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 167 bits (406), Expect = 9e-42
Identities = 83/138 (60%), Positives = 90/138 (65%)
Frame = +3
Query: 144 DGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVA 323
D AG Q P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+
Sbjct: 21 DSAGIQ-MPQ--VLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVS 77
Query: 324 RIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXX 503
RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 78 RIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVP 137
Query: 504 XXXQARGHIIEKIPELPL 557
ARGH IE +PE PL
Sbjct: 138 SLVLARGHRIEGVPEFPL 155
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +2
Query: 629 AWSDILKVYKSXRLRAGKGKMRNRRRIQRKGXLXIFNKD-QGLTRAFRXIPGVE 787
A++D K S +RAGKGKMRNRR I RKG L ++ + + +AFR +PGV+
Sbjct: 179 AYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVD 232
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 291 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 401
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>03_05_0366 - 23505755-23506441
Length = 228
Score = 32.7 bits (71), Expect = 0.35
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +3
Query: 132 REE*DGAGXQPSP---SRFVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAES 299
R+ G+G + P ++ AP D +V S + R P C S E + +AES
Sbjct: 90 RQRQGGSGWERHPWPHDSWIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAES 149
Query: 300 WGTGRAVARIPRVRGGGTHRSGQGA 374
TG A R R+ G T+ + + A
Sbjct: 150 GATGLAHTRAGRIHAGPTNDNDEEA 174
>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 31.9 bits (69), Expect = 0.60
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 683 PYQHEDXETCTP*GYQTMPLRRLRKMTACLVLLISWTLSAT-TQGKLGNLFNNVSSSLNE 507
P +D ETC Q P+ +K+T CL+ ++S LS T + N V+ L+
Sbjct: 2144 PQLQQDLETC-----QETPMAIKKKLTDCLLSVLSIGLSCTKSSPSERNSMKEVAIELHR 2198
Query: 506 RWDA 495
WDA
Sbjct: 2199 IWDA 2202
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 396 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 289
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -1
Query: 369 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 268
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -1
Query: 366 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 268
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 533 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 426
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 213 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 383
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 384 MCRGGRMFAPTKPWRRW 434
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 276 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 380
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 417 SWGRTYVHHDTCYRRHPDRTYEYHH 343
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/89 (25%), Positives = 32/89 (35%)
Frame = +3
Query: 162 PSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVR 341
P +R K P + + + +++ R P V T + S T A AR R
Sbjct: 38 PRATRVKNKTPASVQITAEQILREARSGRSPRSVPPSRRSPTPSSSPSTASAAARSSRTP 97
Query: 342 GGGTHRSGQGAFGNMCRGGRMFAPTKPWR 428
G A G+ GGR T P R
Sbjct: 98 SAAP--GGTSARGSSTPGGRSGRGTSPAR 124
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 360 TYEYHH-HGHAEFGRQHVQYPMIQH 289
T+++HH HGH FGR H +P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHH 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,450,089
Number of Sequences: 37544
Number of extensions: 479000
Number of successful extensions: 1721
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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