Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_G24
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1017 + 21747044-21748051 31 0.86
10_08_0192 + 15625851-15626765 31 1.5
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 31 1.5
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 30 2.0
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 30 2.6
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840... 30 2.6
09_02_0468 - 9608922-9610061 29 3.5
05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857... 29 3.5
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755... 29 3.5
03_05_1040 + 29883071-29883212,29883372-29883439,29883504-29883806 29 4.6
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 29 4.6
10_08_0445 + 17989438-17990895 29 6.1
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239 28 8.1
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297... 28 8.1
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924... 28 8.1
02_05_1314 - 35661824-35661912,35662031-35662454,35662689-356627... 28 8.1
02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162 28 8.1
>04_03_1017 + 21747044-21748051
Length = 335
Score = 31.5 bits (68), Expect = 0.86
Identities = 33/116 (28%), Positives = 44/116 (37%)
Frame = +1
Query: 193 SPMTPPSTTRVGRRRCFIDDFRPRLPPWDXXXXXXXXXXXPRKAQRCSSKGVALRTPR*A 372
SP TPP RR D+ P PP PR+A S + PR A
Sbjct: 194 SPSTPP-------RRAASPDYSPSTPPRRAASPDYSPSTPPRRA--ASPDYTPMSPPRRA 244
Query: 373 SPSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPP 540
+ +TPP A + S PR ++ +PST P++ TVPP
Sbjct: 245 ASPDY-TQMTPPRRAASPDYTPSTPPPPRAASPDYTPSTPPSSPLPSAAESFTVPP 299
>10_08_0192 + 15625851-15626765
Length = 304
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = +1
Query: 400 TPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPPSF 546
TPPPP A S S P++ S+ P+ APTS AT PP F
Sbjct: 6 TPPPPSAPS--SAPPFKSNASSS---RPNRAPPEGAPTSPAAATRPPPF 49
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 207 AIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTL-SIPLP 383
AI CR + RRL AA + +WRID N K A R R T + S+P P
Sbjct: 32 AIRCCCRAQQEPRRRLSKAAAAAPERTEEWRIDGN--KPAAAARGRRRASLTAMPSLPFP 89
Query: 384 TRR 392
+ R
Sbjct: 90 SPR 92
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = +1
Query: 334 SSKGVALRTPR*ASPSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPS 486
SS G+A R P S SR GA+ PP F C + G N SPS
Sbjct: 57 SSSGLAARVPEHRS-SRYGAASPPPSSFTDGSCFFNGSAGGFFGNAGQSPS 106
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 385 LGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPP 540
L AS PPPP R S SP + P ++ P T + PT+ A PP
Sbjct: 73 LAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPPTTTTTTPPTAPVPAAAPP 124
>01_01_1067 +
8403584-8404195,8404532-8404693,8404837-8405346,
8405434-8405493,8405721-8406137,8406576-8407100
Length = 761
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 349 ALRTPR*ASPSRLGASITPPPPFAQSRCSTSPYRG 453
ALR R SP+ A PPPP AQ P RG
Sbjct: 3 ALRFVRGISPAASAAPQPPPPPVAQRHHQQQPSRG 37
>09_02_0468 - 9608922-9610061
Length = 379
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 39 EPFVPISSRGNAFPAPXTSQPESRKAPPSP 128
EP P+ R P QPE+R APP P
Sbjct: 272 EPKEPVPVRRPPIAVPAAPQPENRVAPPPP 301
>05_04_0356 -
20584212-20584628,20584798-20584899,20585658-20585705,
20586046-20586186,20586315-20586437,20587166-20587252,
20587630-20587742,20587844-20587943,20588217-20588601,
20588841-20588917,20589501-20589593,20589697-20589774,
20590923-20591246
Length = 695
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 385 LGASITPPPPFAQSRCSTSPYRGP 456
LGA++ PPPP A ++ + +P GP
Sbjct: 82 LGAALPPPPPAAAAQPAVAPLPGP 105
>03_02_0650 +
10174905-10175000,10175321-10175376,10175467-10175540,
10176215-10176753,10176845-10177186,10177520-10177879,
10177982-10178193,10178881-10179169,10179469-10180152
Length = 883
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 370 ASPSRLGASITPPPPFAQSRCSTSPYRGPRRS 465
A+P+ A+ TPPPP A S + P P+R+
Sbjct: 721 AAPAAQEATNTPPPPAAPSANGSPPQEPPKRA 752
>03_05_1040 + 29883071-29883212,29883372-29883439,29883504-29883806
Length = 170
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 321 STAVLFKRGRPPNTTLSIPLPTRR 392
S FKRG PP + +PLP R+
Sbjct: 118 SNGYAFKRGNPPEGIVEVPLPPRQ 141
>03_02_0168 +
6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 446 YGLVEHRDWANGGGGVIDAPSREGDAQRGVRRATPFEEHRCAFRG 312
YG VEHR+ N G + +G +RG + PF R F G
Sbjct: 531 YGDVEHRELHNAYGYYFHMATADGLLKRGEGKDRPFVLSRAFFAG 575
>10_08_0445 + 17989438-17990895
Length = 485
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 313 PRKAQRCSSKGVALRTPR*ASPSRLGASITPPPPFAQSRCSTSPYRGPRRS 465
PR+ +R ++ VA R R S ++TPPP R +P R P R+
Sbjct: 387 PRRRERAAAAAVARREIR---KSATATNMTPPPSPPHVRAPPAPARRPWRT 434
>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
Length = 569
Score = 28.3 bits (60), Expect = 8.1
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Frame = +1
Query: 319 KAQRCSSKGVALRTPR*ASPSRLGASITPP---------PPFAQSRCSTSPYRGPRRSNI 471
+ +R + G A RTPR S G +P PP + S +P G R+ +
Sbjct: 11 RGRRRGAAGSAARTPRGWCCSFAGVPQSPDLRPFPPSLAPPATAASSSPAPGGGAGRNKL 70
Query: 472 *A-SPSTVG*HSAPTSRRYA 528
SPS HS+PTS R A
Sbjct: 71 PPKSPSISSFHSSPTSSRLA 90
>05_06_0240 -
26629218-26629323,26629412-26629490,26629656-26629761,
26629844-26629947,26630069-26630168,26630256-26630351,
26630464-26630541,26630603-26630671,26630766-26630846,
26630879-26630935,26631016-26631105,26631192-26631278,
26631690-26631794,26631899-26631994,26632222-26632397,
26632847-26633006,26633151-26633600
Length = 679
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 431 HRDWANGGGGVIDAPSREGDAQRGVRRAT 345
H GGGGV+D G A+ G RRAT
Sbjct: 47 HHVPGGGGGGVVDFEVLVGAAEAGNRRAT 75
>04_04_0276 +
24091360-24091464,24091580-24091713,24091813-24092454,
24092858-24093044
Length = 355
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 464 QIFRRHPRQ*DDIPPPHQDGTRPCRL 541
Q+FR H D P H DG RPCR+
Sbjct: 266 QLFRLHASVCDRAAP-HDDGDRPCRV 290
>02_05_1314 -
35661824-35661912,35662031-35662454,35662689-35662787,
35662886-35662995,35663263-35663516,35664080-35664098,
35664834-35665075,35665662-35666401
Length = 658
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = +1
Query: 193 SPMTPPSTTRVGRRRCFIDDFRP-RLPPWDXXXXXXXXXXXPRKAQRCSSKGVALRTP 363
+P+ PPS CF+ P R W PR+ S+ + L TP
Sbjct: 8 TPLPPPSLAAASTSSCFLPSLLPIRRRRWPTPKATATAAFPPRRPAPLSANNLPLHTP 65
>02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162
Length = 213
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -1
Query: 299 APLPEPLSHGGSRGLKSSMKQRLLPTRVVDGGVIGEERQMG 177
AP P P+S G+ G M+ RL R GG GEER G
Sbjct: 57 APAPTPVS--GAGGGDDDMRPRLPTERWRRGGGRGEERHTG 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,076,537
Number of Sequences: 37544
Number of extensions: 606228
Number of successful extensions: 2499
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2498
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -